Wall clock time and date at job start Mon Mar 30 2020 02:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.46682 * 2 1 4 4 C 1.47179 * 111.00206 * 51.02761 * 3 2 1 5 5 C 1.53061 * 108.62359 * 53.46798 * 4 3 2 6 6 C 1.50371 * 109.73346 * 49.39567 * 5 4 3 7 7 C 1.34080 * 122.34867 * 343.76699 * 6 5 4 8 8 C 1.40068 * 118.64916 * 180.22568 * 7 6 5 9 9 H 1.07997 * 119.99991 * 147.86618 * 8 7 6 10 10 C 1.40311 * 119.99939 * 327.85824 * 8 7 6 11 11 N 1.30689 * 120.00037 * 333.84684 * 10 8 7 12 12 Si 1.86803 * 119.99712 * 153.56804 * 10 8 7 13 13 H 1.48497 * 109.47302 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47130 * 120.00216 * 12 10 8 15 15 H 1.48503 * 109.47019 * 240.00116 * 12 10 8 16 16 C 1.46827 * 110.99456 * 174.16026 * 3 2 1 17 17 H 1.08997 * 109.47119 * 175.72084 * 1 2 3 18 18 H 1.08994 * 109.47283 * 295.72138 * 1 2 3 19 19 H 1.09005 * 109.47208 * 55.72285 * 1 2 3 20 20 H 1.08997 * 109.47314 * 240.00298 * 2 1 3 21 21 H 1.08994 * 109.47008 * 120.00023 * 2 1 3 22 22 H 1.09001 * 109.61236 * 173.20773 * 4 3 2 23 23 H 1.08994 * 109.61020 * 293.72689 * 4 3 2 24 24 H 1.09003 * 109.43715 * 169.66833 * 5 4 3 25 25 H 1.09005 * 109.44051 * 289.58390 * 5 4 3 26 26 H 1.08005 * 118.82611 * 163.50125 * 6 5 4 27 27 H 0.96999 * 120.00102 * 353.32493 * 11 10 8 28 28 H 1.09005 * 109.34453 * 167.87423 * 16 3 2 29 29 H 1.08998 * 109.22833 * 48.24932 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3806 2.1704 1.0682 5 6 1.5706 1.4341 2.3966 6 6 3.0152 1.0513 2.5628 7 6 3.8794 1.0492 1.5377 8 6 5.2072 0.6743 1.7794 9 1 5.7744 0.1703 1.0109 10 6 5.8003 0.9538 3.0199 11 7 5.3686 1.9554 3.7398 12 14 7.2019 -0.1108 3.6459 13 1 7.4968 -1.1750 2.6531 14 1 8.4106 0.7288 3.8446 15 1 6.8129 -0.7320 4.9374 16 6 3.4806 1.4266 0.1395 17 1 -0.3633 -1.0248 -0.0767 18 1 -0.3633 0.4460 0.9258 19 1 -0.3634 0.5788 -0.8492 20 1 1.8934 -0.5138 -0.8900 21 1 1.8933 -0.5138 0.8899 22 1 1.8447 3.1550 1.1261 23 1 0.3165 2.2765 0.8577 24 1 1.2680 2.0838 3.2179 25 1 0.9578 0.5326 2.4026 26 1 3.3704 0.7720 3.5439 27 1 4.7060 2.5637 3.3767 28 1 3.8356 2.4340 -0.0778 29 1 3.9286 0.7260 -0.5653 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260070623.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:09 Heat of formation + Delta-G solvation = 1.875938 kcal Electronic energy + Delta-G solvation = -11284.299535 eV Core-core repulsion = 9399.880583 eV Total energy + Delta-G solvation = -1884.418951 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.66564 -34.45877 -31.36667 -30.27536 -28.88984 -24.91578 -23.69503 -22.00192 -20.23257 -18.05203 -16.40848 -15.09626 -14.48603 -13.99270 -13.86784 -13.33469 -12.99347 -12.24373 -11.74648 -11.53801 -11.25328 -11.13214 -10.87059 -10.70547 -10.36613 -10.29952 -10.25201 -10.01451 -9.11295 -8.73020 -7.49943 -7.26757 -6.84279 -4.15731 3.21592 3.28606 3.46487 3.93254 4.23736 4.79938 5.20358 5.56998 5.73053 5.78553 5.95446 6.16504 6.26064 6.30046 6.42972 6.49965 6.53156 6.71415 6.72767 6.77568 6.94144 7.29514 7.69517 7.83812 7.96603 8.08113 8.28574 8.84477 9.01144 9.36311 10.42553 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.068560 B = 0.012504 C = 0.011940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.301885 B = 2238.800239 C = 2344.430153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 N -0.535 5.535 4 C 0.056 3.944 5 C -0.081 4.081 6 C -0.373 4.373 7 C 0.019 3.981 8 C -0.555 4.555 9 H 0.061 0.939 10 C 0.045 3.955 11 N -0.817 5.817 12 Si 1.062 2.938 13 H -0.281 1.281 14 H -0.283 1.283 15 H -0.279 1.279 16 C 0.088 3.912 17 H 0.050 0.950 18 H 0.056 0.944 19 H 0.054 0.946 20 H 0.061 0.939 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.035 0.965 25 H 0.037 0.963 26 H 0.086 0.914 27 H 0.295 0.705 28 H 0.068 0.932 29 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.692 -1.894 -3.992 6.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 N -0.257 5.257 4 C -0.073 4.073 5 C -0.119 4.119 6 C -0.395 4.395 7 C 0.016 3.984 8 C -0.586 4.586 9 H 0.079 0.921 10 C -0.175 4.175 11 N -0.442 5.442 12 Si 0.888 3.112 13 H -0.206 1.206 14 H -0.209 1.209 15 H -0.205 1.205 16 C -0.039 4.039 17 H 0.069 0.931 18 H 0.075 0.925 19 H 0.074 0.926 20 H 0.079 0.921 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.843 -1.881 -3.168 5.324 hybrid contribution -0.714 -0.071 -0.381 0.813 sum -4.557 -1.953 -3.550 6.097 Atomic orbital electron populations 1.21880 0.96143 1.00811 1.01844 1.22019 0.94567 0.90634 1.00994 1.62884 1.06519 1.11502 1.44830 1.22121 0.97895 0.96996 0.90247 1.20518 0.97532 0.97728 0.96138 1.21706 0.92383 1.25740 0.99659 1.18575 0.94149 0.93320 0.92348 1.20099 0.98214 1.38570 1.01709 0.92106 1.26704 1.00989 0.96504 0.93297 1.70279 1.25441 1.09431 1.39084 0.83721 0.75035 0.75963 0.76476 1.20601 1.20907 1.20474 1.21109 0.85977 1.00376 0.96443 0.93083 0.92534 0.92646 0.92101 0.93120 0.91910 0.92172 0.94644 0.94431 0.89589 0.89208 0.91406 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.05 37.16 0.34 -1.96 15 2 C 0.05 0.87 5.11 -3.82 -0.02 0.85 15 3 N -0.53 -10.94 5.13 -236.15 -1.21 -12.16 15 4 C 0.06 1.11 5.41 -3.64 -0.02 1.09 15 5 C -0.08 -1.79 5.40 -28.01 -0.15 -1.94 15 6 C -0.37 -9.84 7.40 -35.93 -0.27 -10.10 15 7 C 0.02 0.51 4.60 -105.63 -0.49 0.02 15 8 C -0.56 -15.49 8.84 -38.12 -0.34 -15.82 15 9 H 0.06 1.67 7.97 -52.49 -0.42 1.25 15 10 C 0.04 1.22 4.71 -17.26 -0.08 1.14 15 11 N -0.82 -23.42 12.46 55.57 0.69 -22.73 15 12 Si 1.06 23.60 30.01 -169.99 -5.10 18.50 15 13 H -0.28 -5.98 7.11 56.52 0.40 -5.57 15 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 16 C 0.09 2.03 5.60 -5.25 -0.03 2.00 15 17 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 18 H 0.06 0.88 5.58 -51.93 -0.29 0.59 15 19 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 20 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.05 1.09 5.94 -51.93 -0.31 0.78 15 22 H 0.06 1.29 8.07 -51.93 -0.42 0.87 15 23 H 0.06 1.05 6.71 -51.93 -0.35 0.70 15 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 25 H 0.04 0.80 5.93 -51.93 -0.31 0.49 15 26 H 0.09 2.54 6.57 -52.48 -0.34 2.19 15 27 H 0.29 8.64 7.08 -40.82 -0.29 8.35 15 28 H 0.07 1.55 8.14 -51.93 -0.42 1.12 15 29 H 0.06 1.39 8.04 -51.93 -0.42 0.97 15 LS Contribution 227.66 15.07 3.43 3.43 Total: -1.00 -28.39 227.66 -7.30 -35.69 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.05 Total: 1.99 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: -1.05 Total: -24.73 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: -0.52 Total: -34.88 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.10 Total: 18.50 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.39 -7.30 -35.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260070623.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.564 kcal (2) G-P(sol) polarization free energy of solvation -28.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds