Wall clock time and date at job start Mon Mar 30 2020 02:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.46682 * 2 1 4 4 C 1.47179 * 111.00206 * 51.02761 * 3 2 1 5 5 C 1.53061 * 108.62359 * 53.46798 * 4 3 2 6 6 C 1.50371 * 109.73346 * 49.39567 * 5 4 3 7 7 C 1.34080 * 122.34867 * 343.76699 * 6 5 4 8 8 C 1.40068 * 118.64916 * 180.22568 * 7 6 5 9 9 H 1.07997 * 119.99991 * 147.86618 * 8 7 6 10 10 C 1.40311 * 119.99939 * 327.85824 * 8 7 6 11 11 N 1.30689 * 120.00037 * 333.84684 * 10 8 7 12 12 Si 1.86803 * 119.99712 * 153.56804 * 10 8 7 13 13 H 1.48497 * 109.47302 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47130 * 120.00216 * 12 10 8 15 15 H 1.48503 * 109.47019 * 240.00116 * 12 10 8 16 16 C 1.46827 * 110.99456 * 174.16026 * 3 2 1 17 17 H 1.08997 * 109.47119 * 175.72084 * 1 2 3 18 18 H 1.08994 * 109.47283 * 295.72138 * 1 2 3 19 19 H 1.09005 * 109.47208 * 55.72285 * 1 2 3 20 20 H 1.08997 * 109.47314 * 240.00298 * 2 1 3 21 21 H 1.08994 * 109.47008 * 120.00023 * 2 1 3 22 22 H 1.09001 * 109.61236 * 173.20773 * 4 3 2 23 23 H 1.08994 * 109.61020 * 293.72689 * 4 3 2 24 24 H 1.09003 * 109.43715 * 169.66833 * 5 4 3 25 25 H 1.09005 * 109.44051 * 289.58390 * 5 4 3 26 26 H 1.08005 * 118.82611 * 163.50125 * 6 5 4 27 27 H 0.96999 * 120.00102 * 353.32493 * 11 10 8 28 28 H 1.09005 * 109.34453 * 167.87423 * 16 3 2 29 29 H 1.08998 * 109.22833 * 48.24932 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3806 2.1704 1.0682 5 6 1.5706 1.4341 2.3966 6 6 3.0152 1.0513 2.5628 7 6 3.8794 1.0492 1.5377 8 6 5.2072 0.6743 1.7794 9 1 5.7744 0.1703 1.0109 10 6 5.8003 0.9538 3.0199 11 7 5.3686 1.9554 3.7398 12 14 7.2019 -0.1108 3.6459 13 1 7.4968 -1.1750 2.6531 14 1 8.4106 0.7288 3.8446 15 1 6.8129 -0.7320 4.9374 16 6 3.4806 1.4266 0.1395 17 1 -0.3633 -1.0248 -0.0767 18 1 -0.3633 0.4460 0.9258 19 1 -0.3634 0.5788 -0.8492 20 1 1.8934 -0.5138 -0.8900 21 1 1.8933 -0.5138 0.8899 22 1 1.8447 3.1550 1.1261 23 1 0.3165 2.2765 0.8577 24 1 1.2680 2.0838 3.2179 25 1 0.9578 0.5326 2.4026 26 1 3.3704 0.7720 3.5439 27 1 4.7060 2.5637 3.3767 28 1 3.8356 2.4340 -0.0778 29 1 3.9286 0.7260 -0.5653 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260070623.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:08 Heat of formation + Delta-G solvation = -16.571331 kcal Electronic energy + Delta-G solvation = -11285.099468 eV Core-core repulsion = 9399.880583 eV Total energy + Delta-G solvation = -1885.218885 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.41749 -36.43797 -33.09967 -32.08195 -30.60710 -26.90715 -25.33206 -23.85214 -21.95131 -19.98436 -18.30591 -16.80344 -16.17054 -15.81941 -15.55435 -15.12419 -14.99211 -13.85211 -13.45042 -13.17580 -12.92487 -12.85512 -12.56963 -12.38717 -12.05483 -11.97962 -11.90715 -11.78175 -11.06038 -10.77527 -9.41956 -9.28584 -8.89773 -6.33869 1.37775 1.46690 1.74264 1.94414 2.37166 3.09060 3.18332 4.14893 4.17228 4.33010 4.50186 4.57946 4.61367 4.65868 4.76161 4.85940 4.89584 5.05424 5.08424 5.20872 5.31949 5.44076 5.76273 5.78676 6.01727 6.15701 6.21769 6.75878 6.90081 7.28105 8.23243 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.068560 B = 0.012504 C = 0.011940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.301885 B = 2238.800239 C = 2344.430153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.044 3.956 3 N -0.527 5.527 4 C 0.060 3.940 5 C -0.078 4.078 6 C -0.375 4.375 7 C 0.003 3.997 8 C -0.588 4.588 9 H 0.057 0.943 10 C 0.003 3.997 11 N -0.839 5.839 12 Si 1.114 2.886 13 H -0.266 1.266 14 H -0.267 1.267 15 H -0.275 1.275 16 C 0.095 3.905 17 H 0.072 0.928 18 H 0.054 0.946 19 H 0.069 0.931 20 H 0.070 0.930 21 H 0.019 0.981 22 H 0.054 0.946 23 H 0.096 0.904 24 H 0.039 0.961 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.278 0.722 28 H 0.066 0.934 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 -2.418 -4.784 7.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 N -0.249 5.249 4 C -0.068 4.068 5 C -0.116 4.116 6 C -0.396 4.396 7 C 0.000 4.000 8 C -0.619 4.619 9 H 0.075 0.925 10 C -0.211 4.211 11 N -0.464 5.464 12 Si 0.933 3.067 13 H -0.191 1.191 14 H -0.192 1.192 15 H -0.201 1.201 16 C -0.033 4.033 17 H 0.091 0.909 18 H 0.073 0.927 19 H 0.088 0.912 20 H 0.089 0.911 21 H 0.037 0.963 22 H 0.073 0.927 23 H 0.114 0.886 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.717 -2.397 -3.978 6.620 hybrid contribution -0.509 0.076 -0.148 0.536 sum -5.226 -2.321 -4.126 7.052 Atomic orbital electron populations 1.21821 0.93027 1.02622 1.02343 1.22116 0.97157 0.89164 0.99977 1.62935 1.04747 1.12696 1.44560 1.22165 0.99880 0.96067 0.88681 1.20513 0.94648 0.98623 0.97825 1.21792 0.94891 1.25200 0.97744 1.18944 0.93855 0.92866 0.94328 1.20412 0.99246 1.39794 1.02442 0.92463 1.28173 1.02917 0.96606 0.93420 1.70416 1.26107 1.10369 1.39480 0.83065 0.72525 0.74804 0.76306 1.19057 1.19248 1.20050 1.20983 0.87966 1.00160 0.94240 0.90922 0.92693 0.91195 0.91118 0.96253 0.92694 0.88551 0.94214 0.93174 0.93577 0.91046 0.91591 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.05 71.98 0.65 -3.16 15 2 C 0.04 1.55 5.11 86.30 0.44 1.99 15 3 N -0.53 -20.56 5.13 -901.05 -4.63 -25.19 15 4 C 0.06 2.27 5.41 86.27 0.47 2.74 15 5 C -0.08 -3.36 5.40 29.76 0.16 -3.20 15 6 C -0.37 -20.09 7.40 24.63 0.18 -19.91 15 7 C 0.00 0.17 4.60 -20.52 -0.09 0.07 15 8 C -0.59 -33.45 8.84 23.22 0.21 -33.24 15 9 H 0.06 3.20 7.97 -2.91 -0.02 3.18 15 10 C 0.00 0.15 4.71 85.37 0.40 0.55 15 11 N -0.84 -49.28 12.46 21.89 0.27 -49.01 15 12 Si 1.11 47.63 30.01 68.60 2.06 49.69 15 13 H -0.27 -10.64 7.11 99.48 0.71 -9.94 15 14 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 15 H -0.28 -11.52 7.11 99.48 0.71 -10.82 15 16 C 0.09 4.30 5.60 85.42 0.48 4.78 15 17 H 0.07 1.67 8.14 -2.39 -0.02 1.65 15 18 H 0.05 1.50 5.58 -2.39 -0.01 1.49 15 19 H 0.07 1.72 8.14 -2.38 -0.02 1.70 15 20 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 21 H 0.02 0.81 5.94 -2.39 -0.01 0.79 15 22 H 0.05 2.16 8.07 -2.39 -0.02 2.14 15 23 H 0.10 3.00 6.71 -2.39 -0.02 2.98 15 24 H 0.04 1.67 8.14 -2.39 -0.02 1.65 15 25 H 0.05 2.05 5.93 -2.38 -0.01 2.03 15 26 H 0.05 2.81 6.57 -2.91 -0.02 2.79 15 27 H 0.28 16.91 7.08 -92.71 -0.66 16.26 15 28 H 0.07 3.00 8.14 -2.38 -0.02 2.98 15 29 H 0.07 2.93 8.04 -2.39 -0.02 2.91 15 Total: -1.00 -61.60 227.66 1.83 -59.77 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 1.23 Total: 14.10 kcal Atomic # 6 Polarization: -52.26 SS G_CDS: 2.89 Total: -49.37 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -4.35 Total: -74.20 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.06 Total: 49.69 kcal Total: -61.60 1.83 -59.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260070623.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.198 kcal (2) G-P(sol) polarization free energy of solvation -61.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds