Wall clock time and date at job start Mon Mar 30 2020 01:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35026 * 1 3 3 C 1.40075 * 120.00116 * 2 1 4 4 H 1.08003 * 119.99778 * 143.64480 * 3 2 1 5 5 C 1.40306 * 119.99995 * 323.64162 * 3 2 1 6 6 N 1.30694 * 119.99902 * 349.24084 * 5 3 2 7 7 Si 1.86796 * 120.00123 * 169.24741 * 5 3 2 8 8 H 1.48500 * 109.47459 * 89.99682 * 7 5 3 9 9 H 1.48501 * 109.47051 * 210.00043 * 7 5 3 10 10 H 1.48504 * 109.46779 * 329.99628 * 7 5 3 11 11 C 1.50699 * 119.99998 * 179.72379 * 2 1 3 12 12 N 1.46897 * 109.47347 * 95.27278 * 11 2 1 13 13 C 1.48533 * 110.99772 * 52.60893 * 12 11 2 14 14 C 1.54937 * 103.22962 * 159.72224 * 13 12 11 15 15 C 1.54594 * 102.91825 * 322.58384 * 14 13 12 16 16 C 1.47903 * 110.99985 * 170.00064 * 12 11 2 17 17 H 1.08002 * 120.00108 * 174.42195 * 1 2 3 18 18 H 1.08000 * 119.99817 * 354.42666 * 1 2 3 19 19 H 0.97000 * 119.99923 * 180.02562 * 6 5 3 20 20 H 1.09005 * 109.47425 * 215.27734 * 11 2 1 21 21 H 1.09006 * 109.46914 * 335.27259 * 11 2 1 22 22 H 1.09000 * 110.66522 * 278.15453 * 13 12 11 23 23 H 1.09001 * 110.66953 * 41.28112 * 13 12 11 24 24 H 1.09001 * 110.72229 * 204.22741 * 14 13 12 25 25 H 1.08997 * 110.72438 * 80.94053 * 14 13 12 26 26 H 1.08998 * 110.30858 * 263.03855 * 15 14 13 27 27 H 1.08998 * 110.39412 * 140.91602 * 15 14 13 28 28 H 1.08992 * 109.91886 * 333.51001 * 16 12 11 29 29 H 1.09004 * 109.91403 * 94.61134 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 2.9730 1.3040 0.5545 5 6 1.5540 2.3099 -0.7203 6 7 0.5619 2.1480 -1.5556 7 14 2.3108 4.0015 -0.4857 8 1 3.4218 4.1854 -1.4538 9 1 1.2769 5.0425 -0.7152 10 1 2.8354 4.1214 0.8984 11 6 2.1038 -1.3051 0.0063 12 7 2.4588 -1.6722 -1.3710 13 6 3.1630 -0.5571 -2.0544 14 6 3.8984 -1.2639 -3.2206 15 6 4.3421 -2.6031 -2.5884 16 6 3.3986 -2.8141 -1.3897 17 1 -0.5400 -0.9309 -0.0909 18 1 -0.5400 0.9309 0.0908 19 1 0.2188 2.9062 -2.0539 20 1 3.0120 -1.1974 0.5993 21 1 1.4770 -2.0844 0.4400 22 1 2.4487 0.1725 -2.4359 23 1 3.8766 -0.0825 -1.3808 24 1 4.7636 -0.6826 -3.5397 25 1 3.2198 -1.4376 -4.0557 26 1 5.3758 -2.5372 -2.2492 27 1 4.2309 -3.4167 -3.3051 28 1 3.9737 -2.8369 -0.4641 29 1 2.8472 -3.7470 -1.5072 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260140533.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:09 Heat of formation + Delta-G solvation = 13.889018 kcal Electronic energy + Delta-G solvation = -11163.426934 eV Core-core repulsion = 9279.528909 eV Total energy + Delta-G solvation = -1883.898025 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.16398 -34.56772 -31.94100 -29.42657 -28.06667 -25.12115 -23.99222 -20.49440 -20.17506 -18.55705 -15.89649 -15.13348 -15.11266 -14.52625 -13.47745 -13.22499 -12.58374 -12.01630 -11.89921 -11.51105 -11.14140 -10.97190 -10.85657 -10.54900 -10.42429 -10.24549 -10.01760 -9.64202 -9.15321 -8.79639 -7.52642 -7.05691 -6.31259 -4.03329 3.13433 3.24506 3.28954 4.07831 4.26654 4.96256 5.23244 5.31810 5.42003 5.68490 5.96377 6.02578 6.22892 6.30846 6.37851 6.40704 6.50050 6.64699 6.89829 6.94060 7.22717 7.48156 7.65381 7.84723 8.03171 8.28086 8.47775 9.09262 9.33165 9.48914 10.70557 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.047168 B = 0.014397 C = 0.012443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.483477 B = 1944.391930 C = 2249.675828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C 0.030 3.970 3 C -0.480 4.480 4 H 0.055 0.945 5 C 0.079 3.921 6 N -0.813 5.813 7 Si 0.890 3.110 8 H -0.276 1.276 9 H -0.281 1.281 10 H -0.267 1.267 11 C 0.087 3.913 12 N -0.506 5.506 13 C 0.056 3.944 14 C -0.131 4.131 15 C -0.128 4.128 16 C 0.031 3.969 17 H 0.044 0.956 18 H 0.079 0.921 19 H 0.269 0.731 20 H 0.019 0.981 21 H 0.053 0.947 22 H 0.098 0.902 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.054 -4.319 -1.773 7.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.340 4.340 2 C 0.029 3.971 3 C -0.513 4.513 4 H 0.073 0.927 5 C -0.134 4.134 6 N -0.441 5.441 7 Si 0.716 3.284 8 H -0.201 1.201 9 H -0.207 1.207 10 H -0.192 1.192 11 C -0.040 4.040 12 N -0.230 5.230 13 C -0.071 4.071 14 C -0.169 4.169 15 C -0.166 4.166 16 C -0.097 4.097 17 H 0.062 0.938 18 H 0.098 0.902 19 H 0.079 0.921 20 H 0.037 0.963 21 H 0.071 0.929 22 H 0.116 0.884 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.438 -4.343 -2.183 7.294 hybrid contribution 1.083 1.070 0.441 1.585 sum 6.521 -3.273 -1.742 7.501 Atomic orbital electron populations 1.23338 0.94676 0.97075 1.18883 1.18226 0.93102 0.90342 0.95466 1.18910 1.07821 0.95673 1.28932 0.92656 1.25617 0.94533 0.99441 0.93829 1.69782 1.22926 1.31317 1.20104 0.86641 0.79265 0.83194 0.79326 1.20140 1.20666 1.19185 1.21395 0.97476 0.97610 0.87547 1.64855 1.36780 1.04626 1.16736 1.23115 0.96803 0.93742 0.93489 1.22591 0.99575 0.95651 0.99098 1.22360 0.98467 0.98245 0.97543 1.22890 0.93663 0.96493 0.96697 0.93751 0.90230 0.92050 0.96322 0.92875 0.88359 0.93785 0.92039 0.91477 0.92348 0.91932 0.94812 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -8.31 12.84 29.59 0.38 -7.93 15 2 C 0.03 0.81 4.42 -105.08 -0.46 0.35 15 3 C -0.48 -13.18 6.90 -38.12 -0.26 -13.44 15 4 H 0.06 1.50 7.87 -52.48 -0.41 1.08 15 5 C 0.08 2.12 5.11 -17.26 -0.09 2.04 15 6 N -0.81 -22.67 11.46 55.57 0.64 -22.04 15 7 Si 0.89 20.19 29.58 -169.99 -5.03 15.16 15 8 H -0.28 -6.14 7.11 56.52 0.40 -5.73 15 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 11 C 0.09 2.04 5.20 -4.98 -0.03 2.01 15 12 N -0.51 -11.10 5.39 -231.89 -1.25 -12.35 15 13 C 0.06 1.22 4.89 -1.90 -0.01 1.21 15 14 C -0.13 -2.26 7.06 -24.87 -0.18 -2.44 15 15 C -0.13 -1.97 6.93 -25.37 -0.18 -2.14 15 16 C 0.03 0.55 6.70 -2.75 -0.02 0.53 15 17 H 0.04 1.18 8.06 -52.49 -0.42 0.76 15 18 H 0.08 2.35 6.91 -52.49 -0.36 1.99 15 19 H 0.27 6.99 8.29 -40.82 -0.34 6.65 15 20 H 0.02 0.42 7.79 -51.93 -0.40 0.02 15 21 H 0.05 1.19 8.04 -51.93 -0.42 0.77 15 22 H 0.10 2.50 7.52 -51.93 -0.39 2.11 15 23 H 0.04 0.99 7.44 -51.93 -0.39 0.61 15 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.07 1.15 8.14 -51.93 -0.42 0.72 15 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 28 H 0.03 0.58 7.57 -51.93 -0.39 0.18 15 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 15 LS Contribution 238.01 15.07 3.59 3.59 Total: -1.00 -28.50 238.01 -7.33 -35.84 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -4.44 Total: -0.38 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -0.84 Total: -19.82 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: -0.61 Total: -34.38 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -28.50 -7.33 -35.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260140533.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.726 kcal (2) G-P(sol) polarization free energy of solvation -28.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds