Wall clock time and date at job start Mon Mar 30 2020 01:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35026 * 1 3 3 C 1.40075 * 120.00116 * 2 1 4 4 H 1.08003 * 119.99778 * 143.64480 * 3 2 1 5 5 C 1.40306 * 119.99995 * 323.64162 * 3 2 1 6 6 N 1.30694 * 119.99902 * 349.24084 * 5 3 2 7 7 Si 1.86796 * 120.00123 * 169.24741 * 5 3 2 8 8 H 1.48500 * 109.47459 * 89.99682 * 7 5 3 9 9 H 1.48501 * 109.47051 * 210.00043 * 7 5 3 10 10 H 1.48504 * 109.46779 * 329.99628 * 7 5 3 11 11 C 1.50699 * 119.99998 * 179.72379 * 2 1 3 12 12 N 1.46897 * 109.47347 * 95.27278 * 11 2 1 13 13 C 1.48533 * 110.99772 * 52.60893 * 12 11 2 14 14 C 1.54937 * 103.22962 * 159.72224 * 13 12 11 15 15 C 1.54594 * 102.91825 * 322.58384 * 14 13 12 16 16 C 1.47903 * 110.99985 * 170.00064 * 12 11 2 17 17 H 1.08002 * 120.00108 * 174.42195 * 1 2 3 18 18 H 1.08000 * 119.99817 * 354.42666 * 1 2 3 19 19 H 0.97000 * 119.99923 * 180.02562 * 6 5 3 20 20 H 1.09005 * 109.47425 * 215.27734 * 11 2 1 21 21 H 1.09006 * 109.46914 * 335.27259 * 11 2 1 22 22 H 1.09000 * 110.66522 * 278.15453 * 13 12 11 23 23 H 1.09001 * 110.66953 * 41.28112 * 13 12 11 24 24 H 1.09001 * 110.72229 * 204.22741 * 14 13 12 25 25 H 1.08997 * 110.72438 * 80.94053 * 14 13 12 26 26 H 1.08998 * 110.30858 * 263.03855 * 15 14 13 27 27 H 1.08998 * 110.39412 * 140.91602 * 15 14 13 28 28 H 1.08992 * 109.91886 * 333.51001 * 16 12 11 29 29 H 1.09004 * 109.91403 * 94.61134 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 2.9730 1.3040 0.5545 5 6 1.5540 2.3099 -0.7203 6 7 0.5619 2.1480 -1.5556 7 14 2.3108 4.0015 -0.4857 8 1 3.4218 4.1854 -1.4538 9 1 1.2769 5.0425 -0.7152 10 1 2.8354 4.1214 0.8984 11 6 2.1038 -1.3051 0.0063 12 7 2.4588 -1.6722 -1.3710 13 6 3.1630 -0.5571 -2.0544 14 6 3.8984 -1.2639 -3.2206 15 6 4.3421 -2.6031 -2.5884 16 6 3.3986 -2.8141 -1.3897 17 1 -0.5400 -0.9309 -0.0909 18 1 -0.5400 0.9309 0.0908 19 1 0.2188 2.9062 -2.0539 20 1 3.0120 -1.1974 0.5993 21 1 1.4770 -2.0844 0.4400 22 1 2.4487 0.1725 -2.4359 23 1 3.8766 -0.0825 -1.3808 24 1 4.7636 -0.6826 -3.5397 25 1 3.2198 -1.4376 -4.0557 26 1 5.3758 -2.5372 -2.2492 27 1 4.2309 -3.4167 -3.3051 28 1 3.9737 -2.8369 -0.4641 29 1 2.8472 -3.7470 -1.5072 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260140533.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:09 Heat of formation + Delta-G solvation = -4.600604 kcal Electronic energy + Delta-G solvation = -11164.228704 eV Core-core repulsion = 9279.528909 eV Total energy + Delta-G solvation = -1884.699795 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.77963 -36.54111 -33.82285 -31.24101 -29.56834 -27.21059 -25.86412 -22.20682 -21.55624 -20.55541 -17.86749 -17.00968 -16.69552 -16.24289 -15.22911 -14.97434 -14.29084 -13.89867 -13.55005 -13.25157 -12.89254 -12.78997 -12.38363 -12.29219 -12.14497 -11.85610 -11.62195 -11.36338 -11.20158 -10.85233 -9.36267 -9.06062 -8.39410 -6.21317 1.31294 1.38816 1.50189 2.03811 2.31827 3.14845 3.60395 3.91824 3.93554 4.20572 4.50687 4.57788 4.62449 4.76826 4.89859 4.95127 5.00634 5.04062 5.25202 5.31598 5.38339 5.44429 5.49384 5.99564 6.21866 6.24887 6.39779 6.95007 7.18287 7.37399 8.63601 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.047168 B = 0.014397 C = 0.012443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.483477 B = 1944.391930 C = 2249.675828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 C 0.030 3.970 3 C -0.502 4.502 4 H 0.055 0.945 5 C 0.037 3.963 6 N -0.841 5.841 7 Si 0.962 3.038 8 H -0.264 1.264 9 H -0.275 1.275 10 H -0.263 1.263 11 C 0.093 3.907 12 N -0.525 5.525 13 C 0.058 3.942 14 C -0.124 4.124 15 C -0.118 4.118 16 C 0.027 3.973 17 H 0.048 0.952 18 H 0.054 0.946 19 H 0.275 0.725 20 H 0.023 0.977 21 H 0.060 0.940 22 H 0.052 0.948 23 H 0.030 0.970 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.924 -4.625 -2.294 9.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.368 4.368 2 C 0.028 3.972 3 C -0.534 4.534 4 H 0.073 0.927 5 C -0.174 4.174 6 N -0.469 5.469 7 Si 0.784 3.216 8 H -0.189 1.189 9 H -0.200 1.200 10 H -0.187 1.187 11 C -0.035 4.035 12 N -0.250 5.250 13 C -0.070 4.070 14 C -0.162 4.162 15 C -0.156 4.156 16 C -0.101 4.101 17 H 0.067 0.933 18 H 0.072 0.928 19 H 0.085 0.915 20 H 0.041 0.959 21 H 0.078 0.922 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.059 0.941 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.310 -4.670 -2.705 9.086 hybrid contribution 0.495 1.155 0.583 1.385 sum 7.805 -3.515 -2.122 8.819 Atomic orbital electron populations 1.23127 0.95192 0.96022 1.22488 1.18618 0.93112 0.92211 0.93233 1.19139 1.08006 0.96685 1.29580 0.92701 1.26461 0.94761 1.03247 0.92973 1.69883 1.23929 1.32766 1.20335 0.85527 0.78675 0.77868 0.79506 1.18887 1.19967 1.18737 1.21248 0.97304 0.95971 0.88993 1.64763 1.38901 1.05866 1.15437 1.22916 0.95650 0.93467 0.94959 1.22546 0.99779 0.96621 0.97241 1.22354 0.98816 0.97618 0.96793 1.23026 0.93655 0.95044 0.98331 0.93347 0.92795 0.91526 0.95856 0.92170 0.92921 0.95189 0.89965 0.91508 0.90263 0.89350 0.94090 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.33 -18.88 12.84 67.08 0.86 -18.02 15 2 C 0.03 1.64 4.42 -20.16 -0.09 1.55 15 3 C -0.50 -27.94 6.90 23.22 0.16 -27.77 15 4 H 0.05 2.99 7.87 -2.91 -0.02 2.97 15 5 C 0.04 2.01 5.11 85.37 0.44 2.45 15 6 N -0.84 -47.84 11.46 21.89 0.25 -47.59 15 7 Si 0.96 41.33 29.58 68.60 2.03 43.36 15 8 H -0.26 -10.82 7.11 99.48 0.71 -10.11 15 9 H -0.27 -11.46 7.11 99.48 0.71 -10.76 15 10 H -0.26 -11.08 7.11 99.48 0.71 -10.38 15 11 C 0.09 4.32 5.20 85.56 0.45 4.77 15 12 N -0.53 -22.65 5.39 -887.56 -4.78 -27.43 15 13 C 0.06 2.51 4.89 86.65 0.42 2.93 15 14 C -0.12 -3.98 7.06 31.80 0.22 -3.76 15 15 C -0.12 -3.16 6.93 31.47 0.22 -2.94 15 16 C 0.03 0.88 6.70 86.45 0.58 1.46 15 17 H 0.05 2.67 8.06 -2.91 -0.02 2.64 15 18 H 0.05 3.33 6.91 -2.91 -0.02 3.31 15 19 H 0.27 14.46 8.29 -92.71 -0.77 13.69 15 20 H 0.02 1.05 7.79 -2.38 -0.02 1.03 15 21 H 0.06 2.67 8.04 -2.38 -0.02 2.66 15 22 H 0.05 2.74 7.52 -2.39 -0.02 2.72 15 23 H 0.03 1.35 7.44 -2.39 -0.02 1.33 15 24 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 25 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 26 H 0.08 1.83 8.14 -2.39 -0.02 1.81 15 27 H 0.09 1.97 8.14 -2.39 -0.02 1.95 15 28 H 0.04 1.28 7.57 -2.39 -0.02 1.26 15 29 H 0.08 2.41 8.14 -2.38 -0.02 2.39 15 Total: -1.00 -61.93 238.01 1.85 -60.08 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 1.10 Total: 10.93 kcal Atomic # 6 Polarization: -42.59 SS G_CDS: 3.26 Total: -39.33 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -4.53 Total: -75.02 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -61.93 1.85 -60.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260140533.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.475 kcal (2) G-P(sol) polarization free energy of solvation -61.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds