Wall clock time and date at job start Mon Mar 30 2020 01:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35030 * 1 3 3 C 1.40070 * 120.00123 * 2 1 4 4 H 1.07999 * 119.99875 * 154.98856 * 3 2 1 5 5 C 1.40305 * 120.00171 * 334.99100 * 3 2 1 6 6 N 1.30688 * 120.00040 * 342.79231 * 5 3 2 7 7 Si 1.86802 * 120.00362 * 162.79527 * 5 3 2 8 8 H 1.48504 * 109.46990 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47012 * 119.99657 * 7 5 3 10 10 H 1.48498 * 109.47244 * 240.00028 * 7 5 3 11 11 C 1.50706 * 119.99858 * 180.02562 * 2 1 3 12 12 H 1.08996 * 109.50070 * 0.07877 * 11 2 1 13 13 C 1.53113 * 109.53245 * 120.17673 * 11 2 1 14 14 C 1.53119 * 109.15761 * 177.61511 * 13 11 2 15 15 C 1.53042 * 109.28188 * 302.34467 * 14 13 11 16 16 N 1.46853 * 109.51958 * 59.17845 * 15 14 13 17 17 C 1.46849 * 111.19637 * 298.25932 * 16 15 14 18 18 H 1.08007 * 119.99661 * 354.28389 * 1 2 3 19 19 H 1.08000 * 120.00328 * 174.27900 * 1 2 3 20 20 H 0.97001 * 120.00450 * 179.97438 * 6 5 3 21 21 H 1.09001 * 109.52459 * 297.51737 * 13 11 2 22 22 H 1.09005 * 109.52545 * 57.65013 * 13 11 2 23 23 H 1.08998 * 109.50752 * 182.40475 * 14 13 11 24 24 H 1.09004 * 109.50723 * 62.28443 * 14 13 11 25 25 H 1.09000 * 109.45972 * 299.16728 * 15 14 13 26 26 H 1.08997 * 109.46751 * 179.19424 * 15 14 13 27 27 H 1.00897 * 110.99896 * 62.35871 * 16 15 14 28 28 H 1.09001 * 109.46086 * 181.75597 * 17 16 15 29 29 H 1.08997 * 109.46513 * 301.72802 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0547 1.2568 0.3954 5 6 1.4479 2.3712 -0.5137 6 7 0.3973 2.2739 -1.2849 7 14 2.1469 4.0522 -0.0954 8 1 3.3297 3.8906 0.7879 9 1 2.5538 4.7440 -1.3449 10 1 1.1135 4.8583 0.6028 11 6 2.1038 -1.3052 -0.0006 12 1 1.3959 -2.1340 -0.0024 13 6 2.9879 -1.3853 -1.2481 14 6 3.7938 -2.6867 -1.2101 15 6 4.6250 -2.7292 0.0742 16 7 3.7335 -2.6503 1.2385 17 6 2.9839 -1.3875 1.2487 18 1 -0.5400 0.9308 0.0932 19 1 -0.5401 -0.9306 -0.0932 20 1 -0.0197 3.0746 -1.6398 21 1 2.3616 -1.3706 -2.1400 22 1 3.6691 -0.5345 -1.2671 23 1 4.4568 -2.7296 -2.0742 24 1 3.1125 -3.5374 -1.2309 25 1 5.3156 -1.8860 0.0878 26 1 5.1890 -3.6611 0.1112 27 1 3.1087 -3.4419 1.2698 28 1 2.3560 -1.3451 2.1387 29 1 3.6822 -0.5507 1.2568 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260154091.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:24 Heat of formation + Delta-G solvation = -21.892503 kcal Electronic energy + Delta-G solvation = -11123.290481 eV Core-core repulsion = 9237.840852 eV Total energy + Delta-G solvation = -1885.449628 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.90334 -36.49839 -33.65909 -32.29270 -29.87189 -27.22364 -24.47115 -23.74865 -21.21099 -20.98108 -17.62459 -17.03391 -16.56579 -15.71627 -15.48692 -15.11903 -14.39485 -14.10687 -13.57808 -13.24101 -12.98844 -12.82408 -12.34441 -12.26405 -12.18267 -12.08287 -11.68258 -11.15508 -11.07346 -10.83413 -9.64039 -8.96361 -8.47071 -6.21538 1.28812 1.38121 1.51723 2.08837 2.27956 3.31415 3.47946 3.93861 4.12594 4.23656 4.41159 4.55072 4.63099 4.77457 4.91323 5.04442 5.11661 5.17884 5.20215 5.30433 5.45156 5.48172 5.55064 6.05499 6.14232 6.32279 6.56739 6.91979 7.17002 7.42796 8.54332 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.054190 B = 0.012644 C = 0.011918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.575212 B = 2213.883465 C = 2348.864707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.386 4.386 2 C 0.040 3.960 3 C -0.492 4.492 4 H 0.067 0.933 5 C 0.028 3.972 6 N -0.836 5.836 7 Si 0.967 3.033 8 H -0.256 1.256 9 H -0.270 1.270 10 H -0.272 1.272 11 C -0.079 4.079 12 H 0.045 0.955 13 C -0.097 4.097 14 C -0.147 4.147 15 C 0.059 3.941 16 N -0.685 5.685 17 C 0.082 3.918 18 H 0.060 0.940 19 H 0.040 0.960 20 H 0.276 0.724 21 H 0.033 0.967 22 H 0.050 0.950 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.344 0.656 28 H 0.063 0.937 29 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.452 -5.733 1.162 9.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.427 4.427 2 C 0.038 3.962 3 C -0.524 4.524 4 H 0.085 0.915 5 C -0.185 4.185 6 N -0.464 5.464 7 Si 0.789 3.211 8 H -0.179 1.179 9 H -0.195 1.195 10 H -0.197 1.197 11 C -0.099 4.099 12 H 0.064 0.936 13 C -0.135 4.135 14 C -0.186 4.186 15 C -0.071 4.071 16 N -0.313 5.313 17 C -0.047 4.047 18 H 0.079 0.921 19 H 0.058 0.942 20 H 0.086 0.914 21 H 0.052 0.948 22 H 0.069 0.931 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.116 0.884 27 H 0.161 0.839 28 H 0.081 0.919 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.829 -5.398 1.467 9.622 hybrid contribution -1.114 0.874 -0.923 1.690 sum 6.715 -4.524 0.543 8.115 Atomic orbital electron populations 1.23145 0.95489 0.96217 1.27815 1.18714 0.92799 0.92720 0.91975 1.19356 1.01097 0.93955 1.37955 0.91535 1.26699 0.94775 1.04545 0.92436 1.69952 1.20416 1.31427 1.24611 0.85398 0.79213 0.77495 0.78992 1.17925 1.19488 1.19748 1.20860 0.96549 0.95540 0.96948 0.93641 1.21394 0.97630 0.98045 0.96407 1.22245 0.99411 0.96535 1.00436 1.22074 0.95034 1.02997 0.86966 1.60791 1.24271 1.04247 1.41992 1.21758 0.95025 0.92253 0.95696 0.92111 0.94151 0.91390 0.94826 0.93071 0.90219 0.91765 0.91720 0.88352 0.83876 0.91850 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.39 -22.50 12.93 67.08 0.87 -21.63 15 2 C 0.04 2.17 4.58 -20.16 -0.09 2.08 15 3 C -0.49 -27.18 8.03 23.22 0.19 -27.00 15 4 H 0.07 3.53 6.95 -2.91 -0.02 3.51 15 5 C 0.03 1.50 5.09 85.37 0.43 1.94 15 6 N -0.84 -48.10 11.03 21.89 0.24 -47.86 15 7 Si 0.97 41.22 29.60 68.60 2.03 43.25 15 8 H -0.26 -10.48 7.11 99.48 0.71 -9.78 15 9 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 11 C -0.08 -3.43 2.50 -11.49 -0.03 -3.46 15 12 H 0.05 1.96 7.84 -2.39 -0.02 1.95 15 13 C -0.10 -3.86 5.14 30.67 0.16 -3.70 15 14 C -0.15 -4.25 6.08 30.65 0.19 -4.07 15 15 C 0.06 1.57 6.55 86.33 0.57 2.14 15 16 N -0.69 -20.79 6.87 -513.99 -3.53 -24.32 15 17 C 0.08 3.15 5.67 86.33 0.49 3.64 15 18 H 0.06 3.83 6.26 -2.91 -0.02 3.81 15 19 H 0.04 2.24 7.91 -2.91 -0.02 2.21 15 20 H 0.28 14.53 8.29 -92.71 -0.77 13.77 15 21 H 0.03 1.44 8.14 -2.39 -0.02 1.42 15 22 H 0.05 2.18 7.67 -2.38 -0.02 2.16 15 23 H 0.08 2.00 8.14 -2.39 -0.02 1.98 15 24 H 0.06 1.75 8.14 -2.38 -0.02 1.73 15 25 H 0.06 1.82 8.14 -2.39 -0.02 1.81 15 26 H 0.10 2.04 8.14 -2.39 -0.02 2.03 15 27 H 0.34 9.33 8.86 -89.70 -0.79 8.54 15 28 H 0.06 2.46 8.14 -2.39 -0.02 2.44 15 29 H 0.06 2.52 7.08 -2.39 -0.02 2.50 15 Total: -1.00 -61.74 235.09 1.83 -59.90 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.33 Total: 19.08 kcal Atomic # 6 Polarization: -52.82 SS G_CDS: 2.77 Total: -50.06 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -3.29 Total: -72.18 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -61.74 1.83 -59.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154091.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.011 kcal (2) G-P(sol) polarization free energy of solvation -61.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds