Wall clock time and date at job start Mon Mar 30 2020 02:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35026 * 1 3 3 C 1.40073 * 120.00157 * 2 1 4 4 H 1.08002 * 120.00210 * 155.01177 * 3 2 1 5 5 C 1.40302 * 119.99817 * 335.00592 * 3 2 1 6 6 N 1.30688 * 120.00275 * 342.78264 * 5 3 2 7 7 Si 1.86806 * 119.99894 * 162.78375 * 5 3 2 8 8 H 1.48505 * 109.46980 * 60.00466 * 7 5 3 9 9 H 1.48504 * 109.47157 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47227 * 300.00081 * 7 5 3 11 11 C 1.50708 * 119.99953 * 179.97438 * 2 1 3 12 12 H 1.08994 * 110.90069 * 3.86877 * 11 2 1 13 13 C 1.55140 * 110.98988 * 240.00136 * 11 2 1 14 14 C 1.54316 * 103.01677 * 206.25598 * 13 11 2 15 15 N 1.47439 * 107.23475 * 22.28470 * 14 13 11 16 16 C 1.46898 * 111.00217 * 123.26169 * 15 14 13 17 17 C 1.47842 * 108.56658 * 0.98768 * 15 14 13 18 18 H 1.08005 * 119.99973 * 354.28539 * 1 2 3 19 19 H 1.08000 * 119.99915 * 174.28138 * 1 2 3 20 20 H 0.97003 * 120.00319 * 179.97438 * 6 5 3 21 21 H 1.09000 * 110.70188 * 87.87356 * 13 11 2 22 22 H 1.09002 * 110.85614 * 324.70546 * 13 11 2 23 23 H 1.08998 * 109.88798 * 262.87742 * 14 13 11 24 24 H 1.09001 * 110.02227 * 141.76626 * 14 13 11 25 25 H 1.09001 * 109.47503 * 59.87006 * 16 15 14 26 26 H 1.09010 * 109.46759 * 299.87241 * 16 15 14 27 27 H 1.09002 * 109.47164 * 179.87524 * 16 15 14 28 28 H 1.09003 * 110.37139 * 94.73957 * 17 15 14 29 29 H 1.09000 * 110.37440 * 217.07395 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0549 1.2568 0.3951 5 6 1.4477 2.3712 -0.5134 6 7 0.3970 2.2740 -1.2845 7 14 2.1467 4.0522 -0.0947 8 1 3.5506 4.1372 -0.5715 9 1 1.3350 5.1048 -0.7570 10 1 2.1105 4.2509 1.3764 11 6 2.1038 -1.3052 0.0006 12 1 1.4184 -2.1499 -0.0677 13 6 3.0088 -1.4238 1.2551 14 6 4.1307 -2.3737 0.7857 15 7 4.1727 -2.3063 -0.6866 16 6 5.5083 -1.9164 -1.1579 17 6 3.1477 -1.3437 -1.1432 18 1 -0.5400 0.9307 0.0931 19 1 -0.5400 -0.9307 -0.0932 20 1 -0.0201 3.0748 -1.6392 21 1 2.4576 -1.8602 2.0880 22 1 3.4175 -0.4520 1.5321 23 1 3.9112 -3.3927 1.1041 24 1 5.0875 -2.0542 1.1989 25 1 6.2414 -2.6483 -0.8187 26 1 5.7627 -0.9349 -0.7575 27 1 5.5119 -1.8765 -2.2472 28 1 3.5902 -0.3578 -1.2866 29 1 2.6856 -1.6911 -2.0672 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260173745.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:34 Heat of formation + Delta-G solvation = 13.010067 kcal Electronic energy + Delta-G solvation = -11081.276128 eV Core-core repulsion = 9197.339989 eV Total energy + Delta-G solvation = -1883.936139 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.41394 -34.60693 -31.98405 -29.60051 -27.54135 -25.13605 -24.79690 -20.56893 -20.17150 -18.93006 -15.61002 -15.33637 -15.09321 -14.30954 -13.61194 -12.81139 -12.76245 -12.74869 -11.93153 -11.54689 -11.23879 -11.01640 -10.87720 -10.75520 -10.56152 -10.29366 -10.02771 -9.43540 -9.15340 -8.83604 -7.82390 -7.16208 -6.39214 -4.03989 3.11801 3.20380 3.23813 4.11402 4.20365 4.60892 5.24752 5.38274 5.54809 5.70884 5.89624 6.00283 6.11014 6.14989 6.20802 6.45568 6.57557 6.71425 6.91748 6.99052 7.09951 7.41351 7.51312 7.62083 7.69522 8.24114 8.51409 9.04382 9.30377 9.51001 10.60374 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.046853 B = 0.013425 C = 0.012005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.467899 B = 2085.116325 C = 2331.788551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.342 4.342 2 C 0.038 3.962 3 C -0.472 4.472 4 H 0.058 0.942 5 C 0.077 3.923 6 N -0.803 5.803 7 Si 0.891 3.109 8 H -0.272 1.272 9 H -0.282 1.282 10 H -0.269 1.269 11 C -0.053 4.053 12 H 0.062 0.938 13 C -0.130 4.130 14 C 0.042 3.958 15 N -0.543 5.543 16 C 0.023 3.977 17 C 0.055 3.945 18 H 0.089 0.911 19 H 0.039 0.961 20 H 0.270 0.730 21 H 0.062 0.938 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.025 0.975 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.635 -3.808 1.680 7.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.383 4.383 2 C 0.037 3.963 3 C -0.504 4.504 4 H 0.077 0.923 5 C -0.138 4.138 6 N -0.430 5.430 7 Si 0.717 3.283 8 H -0.197 1.197 9 H -0.207 1.207 10 H -0.194 1.194 11 C -0.072 4.072 12 H 0.080 0.920 13 C -0.169 4.169 14 C -0.086 4.086 15 N -0.267 5.267 16 C -0.126 4.126 17 C -0.072 4.072 18 H 0.107 0.893 19 H 0.058 0.942 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.404 -4.173 1.315 7.756 hybrid contribution 0.496 1.688 0.389 1.802 sum 6.899 -2.485 1.704 7.528 Atomic orbital electron populations 1.23353 0.94595 0.97505 1.22803 1.18184 0.92932 0.90162 0.95066 1.18923 1.00588 0.93057 1.37796 0.92347 1.25696 0.94652 1.00221 0.93185 1.69825 1.19147 1.30036 1.24036 0.86681 0.79479 0.82558 0.79626 1.19668 1.20745 1.19368 1.21330 0.95197 0.98121 0.92563 0.91995 1.22772 0.96312 0.99260 0.98527 1.22807 0.98131 0.99620 0.88022 1.63617 1.04745 1.48746 1.09601 1.22469 0.90997 0.98489 1.00648 1.23081 0.91813 0.94025 0.98305 0.89286 0.94201 0.91872 0.91876 0.90942 0.91498 0.93669 0.92307 0.95638 0.91871 0.92043 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.34 -9.54 12.95 29.59 0.38 -9.16 15 2 C 0.04 1.02 4.79 -105.07 -0.50 0.52 15 3 C -0.47 -12.87 7.54 -38.12 -0.29 -13.16 15 4 H 0.06 1.55 7.01 -52.49 -0.37 1.18 15 5 C 0.08 2.08 5.09 -17.26 -0.09 1.99 15 6 N -0.80 -22.53 11.03 55.57 0.61 -21.92 15 7 Si 0.89 20.10 29.60 -169.99 -5.03 15.07 15 8 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 10 H -0.27 -6.03 7.11 56.52 0.40 -5.62 15 11 C -0.05 -1.19 3.24 -89.63 -0.29 -1.48 15 12 H 0.06 1.39 7.93 -51.93 -0.41 0.97 15 13 C -0.13 -2.54 6.36 -24.91 -0.16 -2.70 15 14 C 0.04 0.72 6.90 -2.84 -0.02 0.70 15 15 N -0.54 -9.91 5.44 -239.52 -1.30 -11.22 15 16 C 0.02 0.35 9.12 60.06 0.55 0.90 15 17 C 0.05 1.15 6.14 -2.30 -0.01 1.14 15 18 H 0.09 2.65 6.25 -52.48 -0.33 2.33 15 19 H 0.04 1.05 7.95 -52.49 -0.42 0.63 15 20 H 0.27 7.03 8.29 -40.82 -0.34 6.69 15 21 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 22 H 0.07 1.49 6.83 -51.93 -0.35 1.14 15 23 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 24 H 0.04 0.70 7.58 -51.93 -0.39 0.30 15 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.03 0.40 8.10 -51.92 -0.42 -0.02 15 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 28 H 0.06 1.40 6.76 -51.93 -0.35 1.04 15 29 H 0.07 1.44 8.14 -51.93 -0.42 1.01 15 LS Contribution 236.92 15.07 3.57 3.57 Total: -1.00 -28.47 236.92 -6.87 -35.35 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -4.29 Total: 0.40 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -0.43 Total: -21.25 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: -0.69 Total: -33.13 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.47 -6.87 -35.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173745.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.356 kcal (2) G-P(sol) polarization free energy of solvation -28.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds