Wall clock time and date at job start Mon Mar 30 2020 02:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35026 * 1 3 3 C 1.40073 * 120.00157 * 2 1 4 4 H 1.08002 * 120.00210 * 155.01177 * 3 2 1 5 5 C 1.40302 * 119.99817 * 335.00592 * 3 2 1 6 6 N 1.30688 * 120.00275 * 342.78264 * 5 3 2 7 7 Si 1.86806 * 119.99894 * 162.78375 * 5 3 2 8 8 H 1.48505 * 109.46980 * 60.00466 * 7 5 3 9 9 H 1.48504 * 109.47157 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47227 * 300.00081 * 7 5 3 11 11 C 1.50708 * 119.99953 * 179.97438 * 2 1 3 12 12 H 1.08994 * 110.90069 * 3.86877 * 11 2 1 13 13 C 1.55140 * 110.98988 * 240.00136 * 11 2 1 14 14 C 1.54316 * 103.01677 * 206.25598 * 13 11 2 15 15 N 1.47439 * 107.23475 * 22.28470 * 14 13 11 16 16 C 1.46898 * 111.00217 * 123.26169 * 15 14 13 17 17 C 1.47842 * 108.56658 * 0.98768 * 15 14 13 18 18 H 1.08005 * 119.99973 * 354.28539 * 1 2 3 19 19 H 1.08000 * 119.99915 * 174.28138 * 1 2 3 20 20 H 0.97003 * 120.00319 * 179.97438 * 6 5 3 21 21 H 1.09000 * 110.70188 * 87.87356 * 13 11 2 22 22 H 1.09002 * 110.85614 * 324.70546 * 13 11 2 23 23 H 1.08998 * 109.88798 * 262.87742 * 14 13 11 24 24 H 1.09001 * 110.02227 * 141.76626 * 14 13 11 25 25 H 1.09001 * 109.47503 * 59.87006 * 16 15 14 26 26 H 1.09010 * 109.46759 * 299.87241 * 16 15 14 27 27 H 1.09002 * 109.47164 * 179.87524 * 16 15 14 28 28 H 1.09003 * 110.37139 * 94.73957 * 17 15 14 29 29 H 1.09000 * 110.37440 * 217.07395 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0549 1.2568 0.3951 5 6 1.4477 2.3712 -0.5134 6 7 0.3970 2.2740 -1.2845 7 14 2.1467 4.0522 -0.0947 8 1 3.5506 4.1372 -0.5715 9 1 1.3350 5.1048 -0.7570 10 1 2.1105 4.2509 1.3764 11 6 2.1038 -1.3052 0.0006 12 1 1.4184 -2.1499 -0.0677 13 6 3.0088 -1.4238 1.2551 14 6 4.1307 -2.3737 0.7857 15 7 4.1727 -2.3063 -0.6866 16 6 5.5083 -1.9164 -1.1579 17 6 3.1477 -1.3437 -1.1432 18 1 -0.5400 0.9307 0.0931 19 1 -0.5400 -0.9307 -0.0932 20 1 -0.0201 3.0748 -1.6392 21 1 2.4576 -1.8602 2.0880 22 1 3.4175 -0.4520 1.5321 23 1 3.9112 -3.3927 1.1041 24 1 5.0875 -2.0542 1.1989 25 1 6.2414 -2.6483 -0.8187 26 1 5.7627 -0.9349 -0.7575 27 1 5.5119 -1.8765 -2.2472 28 1 3.5902 -0.3578 -1.2866 29 1 2.6856 -1.6911 -2.0672 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260173745.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:34 Heat of formation + Delta-G solvation = -5.332184 kcal Electronic energy + Delta-G solvation = -11082.071508 eV Core-core repulsion = 9197.339989 eV Total energy + Delta-G solvation = -1884.731519 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.99718 -36.56034 -33.82199 -31.28621 -29.22385 -27.23481 -26.25072 -22.37250 -21.62676 -20.92977 -17.58444 -17.08009 -16.80189 -15.98345 -15.10348 -14.56866 -14.42622 -14.20473 -13.75628 -13.39257 -12.87171 -12.63875 -12.52990 -12.39322 -12.20198 -11.99534 -11.84320 -11.30693 -11.13413 -10.87767 -9.38264 -9.15803 -8.46726 -6.21364 1.30936 1.37644 1.47295 2.07443 2.27279 3.16952 3.26835 3.89672 4.08432 4.26184 4.48583 4.55602 4.62546 4.72034 4.81541 4.97487 4.99164 5.07129 5.13454 5.26631 5.31130 5.44046 5.53604 5.98992 6.10783 6.21814 6.31374 6.91376 7.16982 7.41519 8.54481 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.046853 B = 0.013425 C = 0.012005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.467899 B = 2085.116325 C = 2331.788551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.378 4.378 2 C 0.040 3.960 3 C -0.494 4.494 4 H 0.063 0.937 5 C 0.030 3.970 6 N -0.834 5.834 7 Si 0.966 3.034 8 H -0.260 1.260 9 H -0.274 1.274 10 H -0.264 1.264 11 C -0.061 4.061 12 H 0.059 0.941 13 C -0.125 4.125 14 C 0.047 3.953 15 N -0.546 5.546 16 C 0.021 3.979 17 C 0.065 3.935 18 H 0.063 0.937 19 H 0.043 0.957 20 H 0.277 0.723 21 H 0.076 0.924 22 H 0.058 0.942 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.020 0.980 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.600 -3.797 2.202 9.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.419 4.419 2 C 0.038 3.962 3 C -0.525 4.525 4 H 0.081 0.919 5 C -0.183 4.183 6 N -0.462 5.462 7 Si 0.788 3.212 8 H -0.185 1.185 9 H -0.199 1.199 10 H -0.189 1.189 11 C -0.080 4.080 12 H 0.077 0.923 13 C -0.163 4.163 14 C -0.081 4.081 15 N -0.270 5.270 16 C -0.128 4.128 17 C -0.063 4.063 18 H 0.081 0.919 19 H 0.062 0.938 20 H 0.087 0.913 21 H 0.094 0.906 22 H 0.076 0.924 23 H 0.105 0.895 24 H 0.085 0.915 25 H 0.106 0.894 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.376 -4.180 1.839 9.540 hybrid contribution -0.107 1.678 0.195 1.692 sum 8.269 -2.503 2.033 8.875 Atomic orbital electron populations 1.23176 0.95355 0.96471 1.26863 1.18601 0.92863 0.92207 0.92537 1.19226 1.00967 0.93968 1.38347 0.91869 1.26655 0.94831 1.04379 0.92445 1.69929 1.20263 1.31598 1.24362 0.85514 0.79129 0.77125 0.79427 1.18477 1.19860 1.18858 1.21304 0.95723 0.95743 0.95232 0.92270 1.22712 0.96609 0.99495 0.97472 1.22863 0.98071 1.00018 0.87112 1.63629 1.05448 1.47462 1.10491 1.22580 0.89947 0.99116 1.01130 1.22842 0.92211 0.93696 0.97539 0.91898 0.93807 0.91282 0.90556 0.92354 0.89496 0.91490 0.89422 0.96095 0.91359 0.94101 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.38 -21.88 12.95 67.08 0.87 -21.01 15 2 C 0.04 2.16 4.79 -20.16 -0.10 2.07 15 3 C -0.49 -27.13 7.54 23.22 0.17 -26.96 15 4 H 0.06 3.33 7.01 -2.91 -0.02 3.31 15 5 C 0.03 1.59 5.09 85.37 0.43 2.02 15 6 N -0.83 -47.53 11.03 21.89 0.24 -47.29 15 7 Si 0.97 40.87 29.60 68.60 2.03 42.90 15 8 H -0.26 -10.51 7.11 99.48 0.71 -9.81 15 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 15 10 H -0.26 -10.93 7.11 99.48 0.71 -10.22 15 11 C -0.06 -2.73 3.24 -10.15 -0.03 -2.76 15 12 H 0.06 2.65 7.93 -2.39 -0.02 2.63 15 13 C -0.12 -4.66 6.36 31.77 0.20 -4.46 15 14 C 0.05 1.45 6.90 86.65 0.60 2.05 15 15 N -0.55 -18.65 5.44 -911.72 -4.96 -23.62 15 16 C 0.02 0.58 9.12 127.69 1.16 1.74 15 17 C 0.06 2.69 6.14 86.77 0.53 3.23 15 18 H 0.06 3.92 6.25 -2.91 -0.02 3.90 15 19 H 0.04 2.41 7.95 -2.91 -0.02 2.38 15 20 H 0.28 14.52 8.29 -92.71 -0.77 13.75 15 21 H 0.08 2.62 8.14 -2.39 -0.02 2.60 15 22 H 0.06 2.33 6.83 -2.39 -0.02 2.32 15 23 H 0.09 2.39 8.14 -2.39 -0.02 2.37 15 24 H 0.07 1.80 7.58 -2.39 -0.02 1.79 15 25 H 0.09 1.97 8.14 -2.39 -0.02 1.95 15 26 H 0.02 0.60 8.10 -2.38 -0.02 0.58 15 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 15 28 H 0.04 1.85 6.76 -2.39 -0.02 1.84 15 29 H 0.06 2.57 8.14 -2.39 -0.02 2.55 15 Total: -1.00 -61.04 236.92 2.26 -58.78 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.10 Total: 13.30 kcal Atomic # 6 Polarization: -47.92 SS G_CDS: 3.84 Total: -44.07 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: -4.72 Total: -70.90 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -61.04 2.26 -58.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173745.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.447 kcal (2) G-P(sol) polarization free energy of solvation -61.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds