Wall clock time and date at job start Mon Mar 30 2020 02:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35033 * 1 3 3 C 1.40066 * 120.00053 * 2 1 4 4 H 1.08004 * 119.99490 * 205.10749 * 3 2 1 5 5 C 1.40304 * 120.00552 * 25.10018 * 3 2 1 6 6 N 1.30692 * 119.99674 * 14.51382 * 5 3 2 7 7 Si 1.86802 * 120.00524 * 194.51147 * 5 3 2 8 8 H 1.48498 * 109.46843 * 59.99706 * 7 5 3 9 9 H 1.48497 * 109.47231 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47098 * 300.00363 * 7 5 3 11 11 C 1.50706 * 119.99420 * 180.27235 * 2 1 3 12 12 H 1.08995 * 110.29118 * 357.59745 * 11 2 1 13 13 C 1.54259 * 110.31888 * 119.72454 * 11 2 1 14 14 C 1.54384 * 105.05990 * 118.89214 * 13 11 2 15 15 N 1.48563 * 104.59185 * 23.85276 * 14 13 11 16 16 C 1.46900 * 110.99844 * 200.95589 * 15 14 13 17 17 C 1.48553 * 104.22197 * 320.51600 * 15 14 13 18 18 H 1.08001 * 119.99843 * 5.62521 * 1 2 3 19 19 H 1.07994 * 120.00492 * 185.62694 * 1 2 3 20 20 H 0.96996 * 120.00090 * 180.02562 * 6 5 3 21 21 H 1.09000 * 110.32484 * 237.78818 * 13 11 2 22 22 H 1.09004 * 110.32919 * 0.02562 * 13 11 2 23 23 H 1.09005 * 110.41084 * 142.62884 * 14 13 11 24 24 H 1.08993 * 110.41388 * 264.95389 * 14 13 11 25 25 H 1.09001 * 109.46699 * 60.12843 * 16 15 14 26 26 H 1.08996 * 109.47022 * 180.12607 * 16 15 14 27 27 H 1.09003 * 109.47403 * 300.12671 * 16 15 14 28 28 H 1.09001 * 110.41211 * 280.70427 * 17 15 14 29 29 H 1.08996 * 110.41334 * 158.26557 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0542 1.2571 -0.3969 5 6 1.4486 2.3708 0.5154 6 7 0.3683 2.2761 1.2448 7 14 2.1912 4.0475 0.1593 8 1 2.2136 4.2774 -1.3076 9 1 1.3725 5.1002 0.8124 10 1 3.5775 4.0976 0.6893 11 6 2.1037 -1.3052 -0.0062 12 1 1.4081 -2.1434 0.0327 13 6 2.9927 -1.4046 -1.2629 14 6 4.4359 -1.5149 -0.7257 15 7 4.2832 -2.0585 0.6484 16 6 5.4694 -1.7673 1.4645 17 6 3.0845 -1.3639 1.1845 18 1 -0.5400 0.9308 -0.0917 19 1 -0.5401 -0.9307 0.0917 20 1 -0.0482 3.0765 1.6008 21 1 2.7347 -2.2926 -1.8400 22 1 2.8845 -0.5092 -1.8751 23 1 5.0198 -2.1984 -1.3422 24 1 4.9072 -0.5326 -0.6977 25 1 5.6087 -0.6882 1.5309 26 1 5.3321 -2.1781 2.4647 27 1 6.3476 -2.2193 1.0034 28 1 3.3436 -0.3575 1.5135 29 1 2.6509 -1.9335 2.0064 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260173748.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:37 Heat of formation + Delta-G solvation = 13.738275 kcal Electronic energy + Delta-G solvation = -11130.623842 eV Core-core repulsion = 9246.719281 eV Total energy + Delta-G solvation = -1883.904562 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.37185 -34.57164 -32.03158 -29.55188 -27.46954 -25.18211 -24.67180 -20.45640 -20.34234 -18.82208 -15.56884 -15.28045 -15.10650 -14.27772 -13.71237 -13.14800 -12.82239 -12.31465 -11.71732 -11.48104 -11.10822 -11.03666 -10.88690 -10.81480 -10.55354 -10.29047 -9.91074 -9.44751 -9.11934 -8.85012 -7.96248 -7.15165 -6.35584 -4.04040 3.11955 3.20354 3.23635 4.12533 4.22101 4.66028 5.27301 5.43772 5.61254 5.71747 5.90398 6.01252 6.12813 6.14943 6.29776 6.49807 6.64482 6.68748 6.94590 6.98303 7.07461 7.41703 7.47878 7.58507 7.71509 8.25432 8.55086 9.06149 9.31558 9.52652 10.62184 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.043498 B = 0.014336 C = 0.012619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.548574 B = 1952.610356 C = 2218.335531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.340 4.340 2 C 0.033 3.967 3 C -0.468 4.468 4 H 0.058 0.942 5 C 0.074 3.926 6 N -0.806 5.806 7 Si 0.892 3.108 8 H -0.269 1.269 9 H -0.282 1.282 10 H -0.272 1.272 11 C -0.051 4.051 12 H 0.058 0.942 13 C -0.111 4.111 14 C 0.036 3.964 15 N -0.524 5.524 16 C 0.015 3.985 17 C 0.045 3.955 18 H 0.092 0.908 19 H 0.038 0.962 20 H 0.269 0.731 21 H 0.055 0.945 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.041 0.959 25 H 0.027 0.973 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.707 -3.321 -1.156 7.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.381 4.381 2 C 0.031 3.969 3 C -0.500 4.500 4 H 0.076 0.924 5 C -0.140 4.140 6 N -0.434 5.434 7 Si 0.718 3.282 8 H -0.194 1.194 9 H -0.208 1.208 10 H -0.197 1.197 11 C -0.070 4.070 12 H 0.076 0.924 13 C -0.149 4.149 14 C -0.092 4.092 15 N -0.248 5.248 16 C -0.134 4.134 17 C -0.082 4.082 18 H 0.110 0.890 19 H 0.057 0.943 20 H 0.080 0.920 21 H 0.074 0.926 22 H 0.093 0.907 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.512 -3.771 -1.000 7.591 hybrid contribution 0.465 1.779 0.045 1.839 sum 6.977 -1.992 -0.955 7.318 Atomic orbital electron populations 1.23438 0.94670 0.97604 1.22361 1.18313 0.92987 0.90302 0.95250 1.18936 1.00592 0.93039 1.37450 0.92397 1.25705 0.94749 1.00176 0.93398 1.69831 1.18224 1.29805 1.25508 0.86655 0.79519 0.82533 0.79472 1.19383 1.20768 1.19724 1.20952 0.95448 0.98010 0.92602 0.92395 1.22296 0.93225 1.01214 0.98189 1.23057 0.98034 0.97558 0.90590 1.65398 1.03597 1.53358 1.02470 1.22444 0.93660 0.99051 0.98241 1.23189 0.89990 0.97472 0.97558 0.88955 0.94308 0.91962 0.92631 0.90683 0.91474 0.94062 0.95431 0.91867 0.92205 0.91988 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.34 -9.48 12.94 29.59 0.38 -9.10 15 2 C 0.03 0.88 4.54 -105.07 -0.48 0.40 15 3 C -0.47 -12.74 7.43 -38.12 -0.28 -13.03 15 4 H 0.06 1.53 7.57 -52.48 -0.40 1.13 15 5 C 0.07 1.99 5.15 -17.26 -0.09 1.90 15 6 N -0.81 -22.62 10.88 55.57 0.60 -22.01 15 7 Si 0.89 20.14 29.59 -169.99 -5.03 15.12 15 8 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 11 C -0.05 -1.15 3.27 -90.39 -0.30 -1.44 15 12 H 0.06 1.29 7.89 -51.93 -0.41 0.88 15 13 C -0.11 -2.19 6.34 -25.35 -0.16 -2.35 15 14 C 0.04 0.64 6.49 -2.18 -0.01 0.62 15 15 N -0.52 -9.69 5.66 -238.24 -1.35 -11.04 15 16 C 0.02 0.24 9.53 60.06 0.57 0.81 15 17 C 0.05 0.95 5.95 -2.19 -0.01 0.94 15 18 H 0.09 2.76 6.16 -52.49 -0.32 2.43 15 19 H 0.04 1.02 7.93 -52.49 -0.42 0.61 15 20 H 0.27 7.02 8.29 -40.82 -0.34 6.68 15 21 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 22 H 0.07 1.56 7.25 -51.93 -0.38 1.18 15 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.04 0.75 7.97 -51.93 -0.41 0.34 15 25 H 0.03 0.44 7.97 -51.93 -0.41 0.03 15 26 H 0.06 0.91 8.14 -51.93 -0.42 0.48 15 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 28 H 0.06 1.44 6.79 -51.93 -0.35 1.09 15 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 LS Contribution 237.63 15.07 3.58 3.58 Total: -1.00 -28.46 237.63 -6.92 -35.38 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.35 Total: 0.22 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -0.38 Total: -21.25 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: -0.74 Total: -33.05 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.46 -6.92 -35.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173748.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.121 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds