Wall clock time and date at job start Mon Mar 30 2020 02:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35033 * 1 3 3 C 1.40066 * 120.00053 * 2 1 4 4 H 1.08004 * 119.99490 * 205.10749 * 3 2 1 5 5 C 1.40304 * 120.00552 * 25.10018 * 3 2 1 6 6 N 1.30692 * 119.99674 * 14.51382 * 5 3 2 7 7 Si 1.86802 * 120.00524 * 194.51147 * 5 3 2 8 8 H 1.48498 * 109.46843 * 59.99706 * 7 5 3 9 9 H 1.48497 * 109.47231 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47098 * 300.00363 * 7 5 3 11 11 C 1.50706 * 119.99420 * 180.27235 * 2 1 3 12 12 H 1.08995 * 110.29118 * 357.59745 * 11 2 1 13 13 C 1.54259 * 110.31888 * 119.72454 * 11 2 1 14 14 C 1.54384 * 105.05990 * 118.89214 * 13 11 2 15 15 N 1.48563 * 104.59185 * 23.85276 * 14 13 11 16 16 C 1.46900 * 110.99844 * 200.95589 * 15 14 13 17 17 C 1.48553 * 104.22197 * 320.51600 * 15 14 13 18 18 H 1.08001 * 119.99843 * 5.62521 * 1 2 3 19 19 H 1.07994 * 120.00492 * 185.62694 * 1 2 3 20 20 H 0.96996 * 120.00090 * 180.02562 * 6 5 3 21 21 H 1.09000 * 110.32484 * 237.78818 * 13 11 2 22 22 H 1.09004 * 110.32919 * 0.02562 * 13 11 2 23 23 H 1.09005 * 110.41084 * 142.62884 * 14 13 11 24 24 H 1.08993 * 110.41388 * 264.95389 * 14 13 11 25 25 H 1.09001 * 109.46699 * 60.12843 * 16 15 14 26 26 H 1.08996 * 109.47022 * 180.12607 * 16 15 14 27 27 H 1.09003 * 109.47403 * 300.12671 * 16 15 14 28 28 H 1.09001 * 110.41211 * 280.70427 * 17 15 14 29 29 H 1.08996 * 110.41334 * 158.26557 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0542 1.2571 -0.3969 5 6 1.4486 2.3708 0.5154 6 7 0.3683 2.2761 1.2448 7 14 2.1912 4.0475 0.1593 8 1 2.2136 4.2774 -1.3076 9 1 1.3725 5.1002 0.8124 10 1 3.5775 4.0976 0.6893 11 6 2.1037 -1.3052 -0.0062 12 1 1.4081 -2.1434 0.0327 13 6 2.9927 -1.4046 -1.2629 14 6 4.4359 -1.5149 -0.7257 15 7 4.2832 -2.0585 0.6484 16 6 5.4694 -1.7673 1.4645 17 6 3.0845 -1.3639 1.1845 18 1 -0.5400 0.9308 -0.0917 19 1 -0.5401 -0.9307 0.0917 20 1 -0.0482 3.0765 1.6008 21 1 2.7347 -2.2926 -1.8400 22 1 2.8845 -0.5092 -1.8751 23 1 5.0198 -2.1984 -1.3422 24 1 4.9072 -0.5326 -0.6977 25 1 5.6087 -0.6882 1.5309 26 1 5.3321 -2.1781 2.4647 27 1 6.3476 -2.2193 1.0034 28 1 3.3436 -0.3575 1.5135 29 1 2.6509 -1.9335 2.0064 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260173748.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:36 Heat of formation + Delta-G solvation = -4.715063 kcal Electronic energy + Delta-G solvation = -11131.424039 eV Core-core repulsion = 9246.719281 eV Total energy + Delta-G solvation = -1884.704759 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.98227 -36.51777 -33.86374 -31.27222 -29.17197 -27.23189 -26.19614 -22.18701 -21.94565 -20.77568 -17.55414 -17.09717 -16.75277 -15.96811 -15.19971 -14.72608 -14.65449 -13.91116 -13.53382 -13.36294 -12.79940 -12.66806 -12.51661 -12.29752 -12.20526 -12.05347 -11.77222 -11.35170 -11.06825 -10.89122 -9.48224 -9.22832 -8.43176 -6.21295 1.31050 1.37385 1.46951 2.09307 2.27710 3.18789 3.31301 3.91273 4.11444 4.21524 4.49933 4.56312 4.63154 4.74456 4.84413 4.97036 5.00693 5.06963 5.19309 5.28260 5.30652 5.40501 5.54670 5.89990 6.11099 6.14790 6.35267 6.92921 7.18193 7.43210 8.56103 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.043498 B = 0.014336 C = 0.012619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.548574 B = 1952.610356 C = 2218.335531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.376 4.376 2 C 0.036 3.964 3 C -0.489 4.489 4 H 0.062 0.938 5 C 0.026 3.974 6 N -0.836 5.836 7 Si 0.967 3.033 8 H -0.263 1.263 9 H -0.274 1.274 10 H -0.261 1.261 11 C -0.058 4.058 12 H 0.055 0.945 13 C -0.107 4.107 14 C 0.040 3.960 15 N -0.523 5.523 16 C 0.013 3.987 17 C 0.053 3.947 18 H 0.066 0.934 19 H 0.042 0.958 20 H 0.276 0.724 21 H 0.076 0.924 22 H 0.059 0.941 23 H 0.100 0.900 24 H 0.035 0.965 25 H 0.019 0.981 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.036 0.964 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.735 -3.303 -1.536 9.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.417 4.417 2 C 0.034 3.966 3 C -0.520 4.520 4 H 0.081 0.919 5 C -0.186 4.186 6 N -0.464 5.464 7 Si 0.789 3.211 8 H -0.188 1.188 9 H -0.199 1.199 10 H -0.186 1.186 11 C -0.077 4.077 12 H 0.074 0.926 13 C -0.145 4.145 14 C -0.088 4.088 15 N -0.247 5.247 16 C -0.135 4.135 17 C -0.074 4.074 18 H 0.084 0.916 19 H 0.061 0.939 20 H 0.086 0.914 21 H 0.095 0.905 22 H 0.078 0.922 23 H 0.118 0.882 24 H 0.054 0.946 25 H 0.038 0.962 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.054 0.946 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.546 -3.770 -1.380 9.442 hybrid contribution -0.158 1.762 0.193 1.779 sum 8.387 -2.009 -1.187 8.706 Atomic orbital electron populations 1.23262 0.95449 0.96581 1.26426 1.18722 0.92884 0.92309 0.92672 1.19227 1.00932 0.93921 1.37958 0.91938 1.26661 0.95039 1.04286 0.92622 1.69945 1.19414 1.31311 1.25773 0.85499 0.79003 0.77169 0.79438 1.18791 1.19927 1.18594 1.20953 0.95995 0.95650 0.95121 0.92626 1.22251 0.93977 1.01523 0.96783 1.23098 0.96905 0.98234 0.90565 1.65419 1.03675 1.52641 1.02993 1.22554 0.93294 0.98935 0.98743 1.22976 0.91083 0.96397 0.96987 0.91566 0.93905 0.91416 0.90508 0.92179 0.88202 0.94616 0.96202 0.90822 0.89414 0.94588 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.38 -21.78 12.94 67.08 0.87 -20.91 15 2 C 0.04 1.95 4.54 -20.16 -0.09 1.86 15 3 C -0.49 -26.81 7.43 23.22 0.17 -26.63 15 4 H 0.06 3.29 7.57 -2.91 -0.02 3.27 15 5 C 0.03 1.39 5.15 85.36 0.44 1.83 15 6 N -0.84 -47.72 10.88 21.89 0.24 -47.48 15 7 Si 0.97 40.98 29.59 68.60 2.03 43.00 15 8 H -0.26 -10.89 7.11 99.48 0.71 -10.18 15 9 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 10 H -0.26 -10.60 7.11 99.48 0.71 -9.90 15 11 C -0.06 -2.60 3.27 -10.64 -0.03 -2.63 15 12 H 0.06 2.48 7.89 -2.39 -0.02 2.46 15 13 C -0.11 -4.06 6.34 31.49 0.20 -3.86 15 14 C 0.04 1.31 6.49 86.45 0.56 1.87 15 15 N -0.52 -18.05 5.66 -907.64 -5.14 -23.19 15 16 C 0.01 0.38 9.53 127.69 1.22 1.59 15 17 C 0.05 2.22 5.95 86.45 0.51 2.73 15 18 H 0.07 4.13 6.16 -2.91 -0.02 4.11 15 19 H 0.04 2.35 7.93 -2.91 -0.02 2.33 15 20 H 0.28 14.49 8.29 -92.71 -0.77 13.72 15 21 H 0.08 2.56 8.14 -2.39 -0.02 2.54 15 22 H 0.06 2.44 7.25 -2.38 -0.02 2.42 15 23 H 0.10 2.68 8.14 -2.38 -0.02 2.66 15 24 H 0.04 1.22 7.97 -2.39 -0.02 1.20 15 25 H 0.02 0.59 7.97 -2.39 -0.02 0.57 15 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 15 27 H 0.09 2.01 8.14 -2.39 -0.02 1.99 15 28 H 0.04 1.67 6.79 -2.39 -0.02 1.65 15 29 H 0.07 2.72 8.14 -2.39 -0.02 2.70 15 Total: -1.00 -60.97 237.63 2.08 -58.89 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.10 Total: 12.93 kcal Atomic # 6 Polarization: -48.00 SS G_CDS: 3.85 Total: -44.16 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -4.90 Total: -70.67 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Total: -60.97 2.08 -58.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173748.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.175 kcal (2) G-P(sol) polarization free energy of solvation -60.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds