Wall clock time and date at job start Mon Mar 30 2020 02:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.47096 * 330.00620 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 C 1.29823 * 118.55488 * 119.73199 * 12 2 1 14 14 C 1.50145 * 123.29038 * 180.10802 * 13 12 2 15 15 N 1.46851 * 110.32554 * 343.43415 * 14 13 12 16 16 C 1.47236 * 110.20853 * 50.72432 * 15 14 13 17 17 C 1.50302 * 118.55420 * 300.00125 * 12 2 1 18 18 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 21 21 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 22 22 H 1.08005 * 118.35472 * 0.35718 * 13 12 2 23 23 H 1.09000 * 109.47689 * 223.06899 * 14 13 12 24 24 H 1.08996 * 109.00926 * 103.50647 * 14 13 12 25 25 H 1.00898 * 111.00165 * 287.32630 * 15 14 13 26 26 H 1.08997 * 109.63802 * 171.49741 * 16 15 14 27 27 H 1.09000 * 109.80760 * 50.98310 * 16 15 14 28 28 H 1.08993 * 109.43431 * 283.57767 * 17 12 2 29 29 H 1.09002 * 109.43030 * 43.47544 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.6297 -0.5458 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 6 2.0324 -0.7104 -1.2304 13 6 2.7724 -0.0512 -2.0689 14 6 3.3273 -0.6524 -3.3278 15 7 3.2575 -2.1180 -3.2670 16 6 1.8997 -2.5474 -2.8928 17 6 1.6495 -2.1493 -1.4358 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 0.7082 1.1610 3.4844 22 1 3.0038 0.9804 -1.8478 23 1 4.3660 -0.3454 -3.4501 24 1 2.7438 -0.2983 -4.1776 25 1 3.9431 -2.4864 -2.6249 26 1 1.8161 -3.6292 -2.9965 27 1 1.1676 -2.0600 -3.5366 28 1 2.2479 -2.7810 -0.7795 29 1 0.5932 -2.2805 -1.2012 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260224369.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:46 Heat of formation + Delta-G solvation = -0.026630 kcal Electronic energy + Delta-G solvation = -11048.836626 eV Core-core repulsion = 9164.335173 eV Total energy + Delta-G solvation = -1884.501453 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.44194 -34.55718 -31.77470 -30.27474 -28.59788 -25.15819 -23.72432 -22.44761 -20.34986 -17.54178 -16.22032 -15.17132 -14.43428 -14.11439 -14.05249 -13.36634 -12.75796 -12.39398 -11.97910 -11.58419 -11.34732 -11.08873 -10.93948 -10.73511 -10.44362 -10.21348 -9.98264 -9.50841 -9.02664 -8.37535 -8.01030 -7.79735 -6.01071 -4.08064 3.13178 3.28048 3.34883 3.38442 4.41838 4.70899 5.28503 5.41986 5.60580 5.73050 5.81699 5.94688 6.10907 6.23333 6.38409 6.53357 6.72162 6.87507 6.99910 7.20287 7.31167 7.48613 7.59906 7.69869 7.76569 8.06780 8.11297 8.42900 8.94358 9.56430 11.04426 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.056827 B = 0.012001 C = 0.011314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.608944 B = 2332.514535 C = 2474.193140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.066 3.934 3 H 0.030 0.970 4 C -0.505 4.505 5 H 0.054 0.946 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.060 4.060 13 C -0.257 4.257 14 C 0.095 3.905 15 N -0.686 5.686 16 C 0.053 3.947 17 C -0.117 4.117 18 H 0.027 0.973 19 H 0.007 0.993 20 H 0.083 0.917 21 H 0.260 0.740 22 H 0.099 0.901 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.339 0.661 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.624 -3.975 -7.121 8.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.048 3.952 3 H 0.048 0.952 4 C -0.544 4.544 5 H 0.072 0.928 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.060 4.060 13 C -0.276 4.276 14 C -0.034 4.034 15 N -0.313 5.313 16 C -0.077 4.077 17 C -0.156 4.156 18 H 0.046 0.954 19 H 0.026 0.974 20 H 0.102 0.898 21 H 0.070 0.930 22 H 0.117 0.883 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.155 0.845 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.438 -3.943 -7.685 8.756 hybrid contribution 0.267 -0.054 2.021 2.039 sum 1.705 -3.997 -5.664 7.139 Atomic orbital electron populations 1.21761 0.98098 0.99022 1.00062 1.17995 0.92711 0.95135 0.89392 0.95227 1.21064 1.30935 1.12269 0.90090 0.92784 1.24975 0.95107 0.95039 0.98959 1.69887 1.36754 1.23003 1.23340 0.86598 0.78607 0.80054 0.82776 1.20703 1.21195 1.19951 1.21493 0.94020 0.94483 0.96008 1.22508 1.05522 1.01020 0.98577 1.20734 1.00112 0.86907 0.95676 1.61179 1.05923 1.09646 1.54602 1.22134 0.90767 0.99838 0.94945 1.21084 1.02735 0.95156 0.96598 0.95378 0.97441 0.89834 0.92990 0.88286 0.91214 0.91336 0.84504 0.91158 0.91338 0.90839 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.74 37.16 0.32 -2.91 15 2 C 0.07 1.68 2.42 -92.93 -0.22 1.45 15 3 H 0.03 0.83 7.62 -51.93 -0.40 0.43 15 4 C -0.51 -13.90 8.24 -34.44 -0.28 -14.18 15 5 H 0.05 1.47 7.30 -52.48 -0.38 1.09 15 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 15 7 N -0.89 -25.66 11.32 55.43 0.63 -25.03 15 8 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 15 9 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 15 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 12 C -0.06 -1.28 4.70 -100.93 -0.47 -1.76 15 13 C -0.26 -5.02 9.53 -35.96 -0.34 -5.36 15 14 C 0.09 1.52 6.75 -5.27 -0.04 1.49 15 15 N -0.69 -10.69 6.98 -115.09 -0.80 -11.49 15 16 C 0.05 0.82 6.65 -3.59 -0.02 0.80 15 17 C -0.12 -2.20 5.45 -28.03 -0.15 -2.35 15 18 H 0.03 0.65 6.81 -51.93 -0.35 0.29 15 19 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 15 20 H 0.08 2.25 6.07 -51.93 -0.32 1.94 15 21 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 22 H 0.10 1.99 7.63 -52.48 -0.40 1.59 15 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.34 5.13 8.78 -39.29 -0.34 4.78 15 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 27 H 0.07 1.06 8.09 -51.93 -0.42 0.64 15 28 H 0.07 1.41 7.77 -51.93 -0.40 1.01 15 29 H 0.08 1.45 6.63 -51.93 -0.34 1.11 15 LS Contribution 234.49 15.07 3.53 3.53 Total: -1.00 -28.33 234.49 -7.16 -35.49 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -4.19 Total: 2.40 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -1.31 Total: -21.24 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.18 Total: -36.52 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.33 -7.16 -35.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260224369.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.461 kcal (2) G-P(sol) polarization free energy of solvation -28.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds