Wall clock time and date at job start Mon Mar 30 2020 02:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46959 * 90.00076 * 8 6 4 10 10 H 1.48491 * 109.47193 * 210.00468 * 8 6 4 11 11 H 1.48498 * 109.47096 * 330.00620 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 C 1.29823 * 118.55488 * 119.73199 * 12 2 1 14 14 C 1.50145 * 123.29038 * 180.10802 * 13 12 2 15 15 N 1.46851 * 110.32554 * 343.43415 * 14 13 12 16 16 C 1.47236 * 110.20853 * 50.72432 * 15 14 13 17 17 C 1.50302 * 118.55420 * 300.00125 * 12 2 1 18 18 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 21 21 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 22 22 H 1.08005 * 118.35472 * 0.35718 * 13 12 2 23 23 H 1.09000 * 109.47689 * 223.06899 * 14 13 12 24 24 H 1.08996 * 109.00926 * 103.50647 * 14 13 12 25 25 H 1.00898 * 111.00165 * 287.32630 * 15 14 13 26 26 H 1.08997 * 109.63802 * 171.49741 * 16 15 14 27 27 H 1.09000 * 109.80760 * 50.98310 * 16 15 14 28 28 H 1.08993 * 109.43431 * 283.57767 * 17 12 2 29 29 H 1.09002 * 109.43030 * 43.47544 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.6297 -0.5458 4.4124 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5660 3.7121 12 6 2.0324 -0.7104 -1.2304 13 6 2.7724 -0.0512 -2.0689 14 6 3.3273 -0.6524 -3.3278 15 7 3.2575 -2.1180 -3.2670 16 6 1.8997 -2.5474 -2.8928 17 6 1.6495 -2.1493 -1.4358 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 0.7082 1.1610 3.4844 22 1 3.0038 0.9804 -1.8478 23 1 4.3660 -0.3454 -3.4501 24 1 2.7438 -0.2983 -4.1776 25 1 3.9431 -2.4864 -2.6249 26 1 1.8161 -3.6292 -2.9965 27 1 1.1676 -2.0600 -3.5366 28 1 2.2479 -2.7810 -0.7795 29 1 0.5932 -2.2805 -1.2012 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260224369.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:46 Heat of formation + Delta-G solvation = -18.418451 kcal Electronic energy + Delta-G solvation = -11049.634155 eV Core-core repulsion = 9164.335173 eV Total energy + Delta-G solvation = -1885.298982 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.91604 -36.38480 -33.67226 -31.67457 -30.36048 -27.26957 -25.23835 -23.83204 -22.16664 -19.04257 -18.27206 -16.99809 -15.97740 -15.63767 -15.54867 -14.97815 -14.59319 -13.97833 -13.50908 -13.25382 -13.08434 -12.87874 -12.80351 -12.39699 -12.26969 -11.99235 -11.65638 -11.32056 -11.04622 -10.49866 -9.47919 -9.31953 -8.12354 -6.27364 1.37974 1.38466 1.47773 1.54456 2.40881 3.14314 3.45210 4.02966 4.23169 4.31161 4.37935 4.66034 4.78348 4.85356 4.88443 4.95568 5.04472 5.07258 5.22004 5.27868 5.52462 5.72655 5.78127 6.02284 6.06272 6.23125 6.43697 6.49201 6.83113 7.40899 8.91931 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.056827 B = 0.012001 C = 0.011314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.608944 B = 2332.514535 C = 2474.193140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.063 3.937 3 H -0.009 1.009 4 C -0.520 4.520 5 H 0.052 0.948 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.266 1.266 12 C -0.088 4.088 13 C -0.241 4.241 14 C 0.099 3.901 15 N -0.679 5.679 16 C 0.061 3.939 17 C -0.110 4.110 18 H 0.035 0.965 19 H 0.022 0.978 20 H 0.055 0.945 21 H 0.261 0.739 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.342 0.658 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 -5.337 -8.066 9.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.044 3.956 3 H 0.009 0.991 4 C -0.558 4.558 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.560 5.560 8 Si 0.782 3.218 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.190 1.190 12 C -0.089 4.089 13 C -0.260 4.260 14 C -0.030 4.030 15 N -0.307 5.307 16 C -0.068 4.068 17 C -0.149 4.149 18 H 0.054 0.946 19 H 0.041 0.959 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.103 0.897 23 H 0.108 0.892 24 H 0.102 0.898 25 H 0.159 0.841 26 H 0.114 0.886 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.139 -5.313 -8.642 10.368 hybrid contribution 0.067 0.447 2.282 2.326 sum 2.206 -4.866 -6.360 8.306 Atomic orbital electron populations 1.21596 0.97780 0.99173 0.99337 1.17910 0.93118 0.93345 0.91197 0.99109 1.21364 1.30881 1.12282 0.91250 0.92983 1.25789 0.95315 0.95763 1.02027 1.70026 1.37744 1.24283 1.23981 0.85582 0.78029 0.79211 0.79026 1.20303 1.20770 1.19050 1.21370 0.96094 0.96191 0.95212 1.22795 1.03558 1.00280 0.99413 1.20817 1.01287 0.87111 0.93817 1.61218 1.05993 1.09030 1.54425 1.22140 0.90822 1.01432 0.92431 1.21042 1.01977 0.92981 0.98863 0.94642 0.95942 0.92651 0.92974 0.89748 0.89173 0.89806 0.84070 0.88606 0.90885 0.91724 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.05 8.74 71.98 0.63 -5.42 15 2 C 0.06 3.26 2.42 -12.29 -0.03 3.23 15 3 H -0.01 -0.54 7.62 -2.39 -0.02 -0.56 15 4 C -0.52 -28.95 8.24 25.60 0.21 -28.74 15 5 H 0.05 2.85 7.30 -2.91 -0.02 2.83 15 6 C 0.01 0.52 5.30 84.66 0.45 0.97 15 7 N -0.92 -54.15 11.32 21.45 0.24 -53.91 15 8 Si 0.96 43.92 29.54 68.60 2.03 45.95 15 9 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 10 H -0.28 -12.69 7.11 99.48 0.71 -11.99 15 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 15 12 C -0.09 -3.75 4.70 -15.40 -0.07 -3.83 15 13 C -0.24 -9.16 9.53 26.69 0.25 -8.90 15 14 C 0.10 2.88 6.75 85.39 0.58 3.45 15 15 N -0.68 -18.87 6.98 -518.02 -3.62 -22.49 15 16 C 0.06 1.72 6.65 86.27 0.57 2.30 15 17 C -0.11 -3.96 5.45 29.76 0.16 -3.80 15 18 H 0.03 1.66 6.81 -2.39 -0.02 1.64 15 19 H 0.02 0.99 8.14 -2.39 -0.02 0.97 15 20 H 0.05 3.06 6.07 -2.38 -0.01 3.05 15 21 H 0.26 14.57 8.31 -92.70 -0.77 13.80 15 22 H 0.08 3.41 7.63 -2.91 -0.02 3.39 15 23 H 0.09 2.30 8.14 -2.39 -0.02 2.28 15 24 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 25 H 0.34 9.29 8.78 -89.70 -0.79 8.50 15 26 H 0.10 2.25 8.14 -2.39 -0.02 2.23 15 27 H 0.07 2.02 8.09 -2.39 -0.02 2.00 15 28 H 0.06 2.41 7.77 -2.39 -0.02 2.39 15 29 H 0.07 2.56 6.63 -2.39 -0.02 2.54 15 Total: -1.00 -60.47 234.49 1.74 -58.72 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.34 Total: 12.47 kcal Atomic # 6 Polarization: -43.49 SS G_CDS: 2.75 Total: -40.74 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -3.37 Total: -76.40 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -60.47 1.74 -58.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260224369.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.304 kcal (2) G-P(sol) polarization free energy of solvation -60.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds