Wall clock time and date at job start Mon Mar 30 2020 01:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35024 * 1 3 3 C 1.40073 * 120.00164 * 2 1 4 4 H 1.08007 * 120.00162 * 153.51134 * 3 2 1 5 5 C 1.40305 * 119.99906 * 333.24117 * 3 2 1 6 6 N 1.30682 * 120.00118 * 345.43719 * 5 3 2 7 7 Si 1.86804 * 119.99833 * 165.44144 * 5 3 2 8 8 H 1.48496 * 109.47246 * 89.99908 * 7 5 3 9 9 H 1.48505 * 109.46936 * 209.99639 * 7 5 3 10 10 H 1.48496 * 109.47581 * 329.99597 * 7 5 3 11 11 C 1.50704 * 120.00101 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47193 * 94.99600 * 11 2 1 13 13 H 1.08998 * 110.28762 * 54.30491 * 12 11 2 14 14 C 1.54258 * 110.32099 * 176.42643 * 12 11 2 15 15 C 1.54384 * 105.06050 * 118.89910 * 14 12 11 16 16 N 1.48556 * 104.59304 * 23.85079 * 15 14 12 17 17 C 1.48725 * 104.28897 * 320.57440 * 16 15 14 18 18 H 1.07995 * 120.00468 * 174.60543 * 1 2 3 19 19 H 1.08004 * 119.99978 * 354.60523 * 1 2 3 20 20 H 0.97001 * 120.00450 * 180.02562 * 6 5 3 21 21 H 1.09002 * 109.46892 * 215.00149 * 11 2 1 22 22 H 1.09001 * 109.46807 * 334.99860 * 11 2 1 23 23 H 1.09004 * 110.32819 * 237.79071 * 14 12 11 24 24 H 1.08996 * 110.32545 * 0.02562 * 14 12 11 25 25 H 1.08997 * 110.41161 * 142.63368 * 15 14 12 26 26 H 1.09003 * 110.40657 * 265.07714 * 15 14 12 27 27 H 1.00903 * 111.00239 * 200.96489 * 16 15 14 28 28 H 1.09000 * 110.39154 * 280.64167 * 17 16 15 29 29 H 1.09002 * 110.50878 * 158.14290 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3502 0.0000 0.0000 3 6 2.0506 1.2130 0.0000 4 1 3.0457 1.2621 0.4172 5 6 1.4618 2.3631 -0.5471 6 7 0.4007 2.2576 -1.3025 7 14 2.1948 4.0450 -0.1956 8 1 3.2058 4.3710 -1.2332 9 1 1.1183 5.0678 -0.2148 10 1 2.8427 4.0333 1.1405 11 6 2.1038 -1.3051 -0.0006 12 6 2.4676 -1.6833 -1.4377 13 1 3.0076 -0.8674 -1.9181 14 6 3.3171 -2.9708 -1.4542 15 6 2.4862 -3.9893 -2.2640 16 7 1.6039 -3.1558 -3.1205 17 6 1.1947 -2.0295 -2.2397 18 1 -0.5401 -0.9311 -0.0879 19 1 -0.5400 0.9312 0.0879 20 1 -0.0062 3.0526 -1.6811 21 1 3.0145 -1.1991 0.5889 22 1 1.4788 -2.0856 0.4334 23 1 4.2733 -2.7874 -1.9443 24 1 3.4745 -3.3336 -0.4385 25 1 3.1388 -4.6086 -2.8794 26 1 1.8903 -4.6108 -1.5956 27 1 0.8010 -3.6815 -3.4322 28 1 0.3959 -2.3436 -1.5679 29 1 0.8769 -1.1743 -2.8361 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260391819.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:46 Heat of formation + Delta-G solvation = 3.509723 kcal Electronic energy + Delta-G solvation = -10974.574853 eV Core-core repulsion = 9090.226748 eV Total energy + Delta-G solvation = -1884.348105 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.16854 -34.78400 -32.05297 -29.59024 -28.11484 -24.99453 -24.36015 -21.04751 -19.30061 -18.81850 -15.88033 -15.67312 -15.09377 -14.57830 -13.61829 -12.99567 -12.56558 -12.06445 -11.80084 -11.51382 -11.45879 -11.10020 -10.99468 -10.69740 -10.47344 -9.99725 -9.78594 -9.41159 -9.15085 -8.81548 -8.17101 -7.12502 -6.33110 -4.00739 3.14014 3.24650 3.29610 4.16241 4.26302 4.75341 5.21770 5.30687 5.41635 5.62063 5.88499 5.94202 6.17608 6.29687 6.36108 6.52099 6.62828 6.73111 6.95066 7.06440 7.21442 7.28936 7.45186 7.69175 7.71051 8.29364 8.56835 9.09015 9.34895 9.56552 10.65505 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.064517 B = 0.011050 C = 0.010732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.889003 B = 2533.361321 C = 2608.309266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.341 4.341 2 C 0.030 3.970 3 C -0.474 4.474 4 H 0.059 0.941 5 C 0.076 3.924 6 N -0.805 5.805 7 Si 0.893 3.107 8 H -0.275 1.275 9 H -0.281 1.281 10 H -0.266 1.266 11 C -0.070 4.070 12 C -0.074 4.074 13 H 0.079 0.921 14 C -0.124 4.124 15 C 0.036 3.964 16 N -0.674 5.674 17 C 0.051 3.949 18 H 0.036 0.964 19 H 0.087 0.913 20 H 0.269 0.731 21 H 0.049 0.951 22 H 0.039 0.961 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.327 0.673 28 H 0.040 0.960 29 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.012 -6.818 -1.115 7.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.382 4.382 2 C 0.028 3.972 3 C -0.506 4.506 4 H 0.077 0.923 5 C -0.138 4.138 6 N -0.433 5.433 7 Si 0.718 3.282 8 H -0.201 1.201 9 H -0.206 1.206 10 H -0.190 1.190 11 C -0.108 4.108 12 C -0.093 4.093 13 H 0.098 0.902 14 C -0.162 4.162 15 C -0.094 4.094 16 N -0.302 5.302 17 C -0.077 4.077 18 H 0.055 0.945 19 H 0.105 0.895 20 H 0.079 0.921 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.051 0.949 27 H 0.141 0.859 28 H 0.058 0.942 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.397 -6.333 -1.656 7.375 hybrid contribution -0.403 0.459 0.663 0.902 sum 2.993 -5.874 -0.992 6.667 Atomic orbital electron populations 1.23287 0.94586 0.97163 1.23164 1.18342 0.93188 0.90830 0.94800 1.19077 1.01529 0.93579 1.36450 0.92313 1.25700 0.94641 1.00178 0.93311 1.69825 1.19107 1.29989 1.24369 0.86593 0.79225 0.82729 0.79614 1.20078 1.20641 1.19041 1.20730 0.98836 0.97322 0.93928 1.21720 0.94892 0.96147 0.96576 0.90237 1.22448 0.98775 0.95798 0.99190 1.22872 0.96119 0.95556 0.94837 1.63788 1.20268 1.10372 1.35735 1.22973 0.96682 0.93800 0.94291 0.94519 0.89459 0.92051 0.93263 0.94190 0.91770 0.91779 0.91117 0.94878 0.85863 0.94162 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.34 -9.42 12.37 29.59 0.37 -9.05 15 2 C 0.03 0.80 4.64 -105.07 -0.49 0.31 15 3 C -0.47 -13.26 9.04 -38.12 -0.34 -13.61 15 4 H 0.06 1.59 7.89 -52.48 -0.41 1.18 15 5 C 0.08 2.07 5.13 -17.26 -0.09 1.98 15 6 N -0.81 -22.69 10.99 55.57 0.61 -22.08 15 7 Si 0.89 20.34 29.59 -169.99 -5.03 15.31 15 8 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 9 H -0.28 -6.30 7.11 56.52 0.40 -5.89 15 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 11 C -0.07 -1.56 4.53 -27.88 -0.13 -1.69 15 12 C -0.07 -1.51 3.06 -89.24 -0.27 -1.78 15 13 H 0.08 1.79 8.14 -51.93 -0.42 1.37 15 14 C -0.12 -2.04 6.65 -25.35 -0.17 -2.20 15 15 C 0.04 0.54 7.47 -2.18 -0.02 0.52 15 16 N -0.67 -11.34 7.62 -109.53 -0.84 -12.18 15 17 C 0.05 1.02 6.26 -2.09 -0.01 1.01 15 18 H 0.04 0.95 7.52 -52.49 -0.39 0.56 15 19 H 0.09 2.61 6.28 -52.48 -0.33 2.28 15 20 H 0.27 7.02 8.29 -40.82 -0.34 6.68 15 21 H 0.05 1.05 8.12 -51.93 -0.42 0.63 15 22 H 0.04 0.84 7.92 -51.93 -0.41 0.43 15 23 H 0.06 1.00 8.14 -51.93 -0.42 0.57 15 24 H 0.06 0.98 7.71 -51.93 -0.40 0.58 15 25 H 0.07 0.94 8.14 -51.93 -0.42 0.51 15 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 15 27 H 0.33 4.76 8.92 -39.29 -0.35 4.41 15 28 H 0.04 0.82 7.13 -51.93 -0.37 0.45 15 29 H 0.08 1.90 8.14 -51.93 -0.42 1.48 15 LS Contribution 239.17 15.07 3.60 3.60 Total: -1.00 -28.80 239.17 -7.14 -35.95 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -4.34 Total: 3.92 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -1.15 Total: -24.52 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: -0.22 Total: -34.26 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.80 -7.14 -35.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260391819.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.457 kcal (2) G-P(sol) polarization free energy of solvation -28.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds