Wall clock time and date at job start Mon Mar 30 2020 01:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35024 * 1 3 3 C 1.40073 * 120.00164 * 2 1 4 4 H 1.08007 * 120.00162 * 153.51134 * 3 2 1 5 5 C 1.40305 * 119.99906 * 333.24117 * 3 2 1 6 6 N 1.30682 * 120.00118 * 345.43719 * 5 3 2 7 7 Si 1.86804 * 119.99833 * 165.44144 * 5 3 2 8 8 H 1.48496 * 109.47246 * 89.99908 * 7 5 3 9 9 H 1.48505 * 109.46936 * 209.99639 * 7 5 3 10 10 H 1.48496 * 109.47581 * 329.99597 * 7 5 3 11 11 C 1.50704 * 120.00101 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47193 * 94.99600 * 11 2 1 13 13 H 1.08998 * 110.28762 * 54.30491 * 12 11 2 14 14 C 1.54258 * 110.32099 * 176.42643 * 12 11 2 15 15 C 1.54384 * 105.06050 * 118.89910 * 14 12 11 16 16 N 1.48556 * 104.59304 * 23.85079 * 15 14 12 17 17 C 1.48725 * 104.28897 * 320.57440 * 16 15 14 18 18 H 1.07995 * 120.00468 * 174.60543 * 1 2 3 19 19 H 1.08004 * 119.99978 * 354.60523 * 1 2 3 20 20 H 0.97001 * 120.00450 * 180.02562 * 6 5 3 21 21 H 1.09002 * 109.46892 * 215.00149 * 11 2 1 22 22 H 1.09001 * 109.46807 * 334.99860 * 11 2 1 23 23 H 1.09004 * 110.32819 * 237.79071 * 14 12 11 24 24 H 1.08996 * 110.32545 * 0.02562 * 14 12 11 25 25 H 1.08997 * 110.41161 * 142.63368 * 15 14 12 26 26 H 1.09003 * 110.40657 * 265.07714 * 15 14 12 27 27 H 1.00903 * 111.00239 * 200.96489 * 16 15 14 28 28 H 1.09000 * 110.39154 * 280.64167 * 17 16 15 29 29 H 1.09002 * 110.50878 * 158.14290 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3502 0.0000 0.0000 3 6 2.0506 1.2130 0.0000 4 1 3.0457 1.2621 0.4172 5 6 1.4618 2.3631 -0.5471 6 7 0.4007 2.2576 -1.3025 7 14 2.1948 4.0450 -0.1956 8 1 3.2058 4.3710 -1.2332 9 1 1.1183 5.0678 -0.2148 10 1 2.8427 4.0333 1.1405 11 6 2.1038 -1.3051 -0.0006 12 6 2.4676 -1.6833 -1.4377 13 1 3.0076 -0.8674 -1.9181 14 6 3.3171 -2.9708 -1.4542 15 6 2.4862 -3.9893 -2.2640 16 7 1.6039 -3.1558 -3.1205 17 6 1.1947 -2.0295 -2.2397 18 1 -0.5401 -0.9311 -0.0879 19 1 -0.5400 0.9312 0.0879 20 1 -0.0062 3.0526 -1.6811 21 1 3.0145 -1.1991 0.5889 22 1 1.4788 -2.0856 0.4334 23 1 4.2733 -2.7874 -1.9443 24 1 3.4745 -3.3336 -0.4385 25 1 3.1388 -4.6086 -2.8794 26 1 1.8903 -4.6108 -1.5956 27 1 0.8010 -3.6815 -3.4322 28 1 0.3959 -2.3436 -1.5679 29 1 0.8769 -1.1743 -2.8361 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260391819.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:46 Heat of formation + Delta-G solvation = -15.622517 kcal Electronic energy + Delta-G solvation = -10975.404489 eV Core-core repulsion = 9090.226748 eV Total energy + Delta-G solvation = -1885.177741 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.67698 -36.74820 -33.94863 -31.24531 -29.65027 -27.11035 -26.14781 -22.40664 -21.11074 -20.63643 -17.74591 -17.25062 -16.93570 -16.25930 -15.29371 -14.70676 -14.32605 -13.80844 -13.40163 -13.26494 -13.05645 -12.82612 -12.50434 -12.39481 -12.27278 -11.71221 -11.55702 -11.28178 -11.08208 -10.87581 -9.53326 -9.24515 -8.42462 -6.20536 1.31904 1.38658 1.51301 2.12042 2.30399 3.28164 3.45833 3.83127 3.95383 4.21375 4.36567 4.57356 4.70696 4.83629 4.89920 4.96214 5.02332 5.16122 5.21773 5.31001 5.34101 5.47869 5.57589 5.82875 6.10934 6.35469 6.45418 6.94027 7.19637 7.46537 8.57392 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.064517 B = 0.011050 C = 0.010732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.889003 B = 2533.361321 C = 2608.309266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.363 4.363 2 C 0.026 3.974 3 C -0.509 4.509 4 H 0.062 0.938 5 C 0.029 3.971 6 N -0.835 5.835 7 Si 0.969 3.031 8 H -0.265 1.265 9 H -0.274 1.274 10 H -0.260 1.260 11 C -0.065 4.065 12 C -0.075 4.075 13 H 0.049 0.951 14 C -0.118 4.118 15 C 0.038 3.962 16 N -0.677 5.677 17 C 0.059 3.941 18 H 0.045 0.955 19 H 0.058 0.942 20 H 0.275 0.725 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.048 0.952 27 H 0.342 0.658 28 H 0.033 0.967 29 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 -7.491 -1.057 8.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.404 4.404 2 C 0.024 3.976 3 C -0.540 4.540 4 H 0.080 0.920 5 C -0.183 4.183 6 N -0.463 5.463 7 Si 0.791 3.209 8 H -0.190 1.190 9 H -0.199 1.199 10 H -0.184 1.184 11 C -0.103 4.103 12 C -0.094 4.094 13 H 0.067 0.933 14 C -0.156 4.156 15 C -0.091 4.091 16 N -0.306 5.306 17 C -0.070 4.070 18 H 0.063 0.937 19 H 0.076 0.924 20 H 0.085 0.915 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.115 0.885 26 H 0.066 0.934 27 H 0.157 0.843 28 H 0.051 0.949 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.734 -7.033 -1.601 8.628 hybrid contribution -0.832 0.663 0.611 1.227 sum 3.903 -6.370 -0.990 7.536 Atomic orbital electron populations 1.23074 0.95091 0.96134 1.26100 1.18787 0.93272 0.92851 0.92681 1.19464 1.02071 0.94948 1.37533 0.92007 1.26645 0.94924 1.04298 0.92479 1.69929 1.20239 1.31519 1.24596 0.85422 0.78599 0.77182 0.79720 1.18979 1.19852 1.18378 1.20679 0.98742 0.95283 0.95559 1.21615 0.95521 0.97427 0.94836 0.93259 1.22426 0.98607 0.93714 1.00808 1.22977 0.95960 0.95101 0.95058 1.63718 1.21140 1.10357 1.35387 1.22688 0.96355 0.93949 0.94003 0.93699 0.92389 0.91468 0.92316 0.93060 0.90722 0.90085 0.88462 0.93353 0.84257 0.94901 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.36 -20.69 12.37 67.08 0.83 -19.86 15 2 C 0.03 1.39 4.64 -20.16 -0.09 1.30 15 3 C -0.51 -28.79 9.04 23.22 0.21 -28.58 15 4 H 0.06 3.36 7.89 -2.91 -0.02 3.34 15 5 C 0.03 1.57 5.13 85.37 0.44 2.01 15 6 N -0.84 -48.07 10.99 21.89 0.24 -47.83 15 7 Si 0.97 41.69 29.59 68.60 2.03 43.72 15 8 H -0.26 -10.92 7.11 99.48 0.71 -10.22 15 9 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 10 H -0.26 -10.85 7.11 99.48 0.71 -10.15 15 11 C -0.06 -2.85 4.53 29.85 0.14 -2.71 15 12 C -0.07 -3.00 3.06 -9.90 -0.03 -3.03 15 13 H 0.05 2.25 8.14 -2.39 -0.02 2.23 15 14 C -0.12 -3.53 6.65 31.49 0.21 -3.33 15 15 C 0.04 1.01 7.47 86.45 0.65 1.65 15 16 N -0.68 -21.58 7.62 -500.46 -3.82 -25.40 15 17 C 0.06 2.38 6.26 86.42 0.54 2.92 15 18 H 0.04 2.40 7.52 -2.91 -0.02 2.38 15 19 H 0.06 3.60 6.28 -2.91 -0.02 3.59 15 20 H 0.28 14.58 8.29 -92.71 -0.77 13.81 15 21 H 0.06 2.43 8.12 -2.39 -0.02 2.41 15 22 H 0.05 2.11 7.92 -2.39 -0.02 2.09 15 23 H 0.07 2.10 8.14 -2.38 -0.02 2.08 15 24 H 0.08 2.18 7.71 -2.39 -0.02 2.16 15 25 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 26 H 0.05 1.16 8.14 -2.39 -0.02 1.15 15 27 H 0.34 9.27 8.92 -89.69 -0.80 8.47 15 28 H 0.03 1.35 7.13 -2.39 -0.02 1.33 15 29 H 0.05 2.26 8.14 -2.39 -0.02 2.24 15 Total: -1.00 -62.45 239.17 1.66 -60.79 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.32 Total: 18.36 kcal Atomic # 6 Polarization: -52.53 SS G_CDS: 2.89 Total: -49.64 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -3.58 Total: -73.23 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -62.45 1.66 -60.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260391819.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.165 kcal (2) G-P(sol) polarization free energy of solvation -62.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds