Wall clock time and date at job start Mon Mar 30 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35038 * 1 3 3 C 1.40065 * 120.00105 * 2 1 4 4 H 1.07999 * 120.00276 * 153.24938 * 3 2 1 5 5 C 1.40315 * 120.00150 * 333.24977 * 3 2 1 6 6 N 1.30698 * 119.99860 * 345.30267 * 5 3 2 7 7 Si 1.86800 * 120.00200 * 165.57886 * 5 3 2 8 8 H 1.48507 * 109.46937 * 179.72555 * 7 5 3 9 9 H 1.48497 * 109.46891 * 299.72442 * 7 5 3 10 10 H 1.48492 * 109.46949 * 59.72337 * 7 5 3 11 11 C 1.50701 * 119.99984 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.47170 * 94.99770 * 11 2 1 13 13 H 1.09005 * 110.27431 * 305.69962 * 12 11 2 14 14 C 1.54602 * 110.30609 * 183.60984 * 12 11 2 15 15 C 1.55100 * 102.84415 * 219.18474 * 14 12 11 16 16 N 1.48533 * 103.28570 * 37.30621 * 15 14 12 17 17 C 1.47903 * 105.82249 * 320.84776 * 16 15 14 18 18 H 1.08002 * 119.99954 * 174.57364 * 1 2 3 19 19 H 1.07996 * 120.00132 * 354.57576 * 1 2 3 20 20 H 0.96997 * 120.00119 * 179.97438 * 6 5 3 21 21 H 1.09001 * 109.47294 * 214.99586 * 11 2 1 22 22 H 1.09001 * 109.47179 * 334.99707 * 11 2 1 23 23 H 1.08996 * 110.72573 * 337.48983 * 14 12 11 24 24 H 1.09004 * 110.71779 * 100.77193 * 14 12 11 25 25 H 1.09004 * 110.59538 * 278.88007 * 15 14 12 26 26 H 1.08994 * 110.82977 * 155.85427 * 15 14 12 27 27 H 1.00902 * 110.99982 * 81.35563 * 16 15 14 28 28 H 1.08995 * 109.91990 * 265.97794 * 17 16 15 29 29 H 1.09003 * 110.08407 * 144.76756 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3504 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0440 1.2631 0.4210 5 6 1.4618 2.3632 -0.5469 6 7 0.4021 2.2575 -1.3045 7 14 2.1970 4.0447 -0.1987 8 1 1.3990 5.0872 -0.8927 9 1 2.1788 4.2995 1.2642 10 1 3.5976 4.0841 -0.6905 11 6 2.1039 -1.3051 -0.0006 12 6 2.4677 -1.6833 -1.4378 13 1 1.5749 -1.6943 -2.0630 14 6 3.1623 -3.0642 -1.4697 15 6 4.2690 -2.8688 -2.5386 16 7 4.7253 -1.4744 -2.3066 17 6 3.5048 -0.6958 -2.0042 18 1 -0.5400 -0.9311 -0.0885 19 1 -0.5400 0.9311 0.0884 20 1 -0.0053 3.0526 -1.6823 21 1 3.0146 -1.1991 0.5888 22 1 1.4790 -2.0857 0.4334 23 1 3.6004 -3.2981 -0.4995 24 1 2.4617 -3.8413 -1.7753 25 1 3.8565 -2.9765 -3.5418 26 1 5.0869 -3.5722 -2.3828 27 1 5.3808 -1.4312 -1.5407 28 1 3.1215 -0.2371 -2.9156 29 1 3.7258 0.0748 -1.2655 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260391820.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:48 Heat of formation + Delta-G solvation = -16.227012 kcal Electronic energy + Delta-G solvation = -11055.311220 eV Core-core repulsion = 9170.107266 eV Total energy + Delta-G solvation = -1885.203954 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.77511 -36.75029 -33.90246 -30.98968 -29.65246 -27.28053 -25.85446 -22.67526 -21.38098 -20.21123 -17.79599 -17.18196 -16.88885 -16.35048 -15.05622 -14.76158 -14.34490 -13.94368 -13.69134 -13.05581 -13.00895 -12.72119 -12.51706 -12.28014 -12.07028 -11.77850 -11.43728 -11.37037 -11.13881 -10.87392 -9.51125 -9.26451 -8.42705 -6.19615 1.33680 1.39404 1.48898 2.10693 2.29680 3.29905 3.46475 3.91171 3.97737 4.23833 4.52442 4.56142 4.67329 4.81482 4.86783 5.02005 5.14329 5.17137 5.22423 5.29977 5.41006 5.46841 5.55081 5.90777 6.09559 6.33668 6.55482 6.93481 7.17980 7.44901 8.57373 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.050318 B = 0.013188 C = 0.011442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.329658 B = 2122.564161 C = 2446.497434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.378 4.378 2 C 0.028 3.972 3 C -0.492 4.492 4 H 0.065 0.935 5 C 0.030 3.970 6 N -0.835 5.835 7 Si 0.964 3.036 8 H -0.276 1.276 9 H -0.264 1.264 10 H -0.259 1.259 11 C -0.063 4.063 12 C -0.098 4.098 13 H 0.043 0.957 14 C -0.145 4.145 15 C 0.045 3.955 16 N -0.682 5.682 17 C 0.057 3.943 18 H 0.041 0.959 19 H 0.060 0.940 20 H 0.275 0.725 21 H 0.057 0.943 22 H 0.048 0.952 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.342 0.658 28 H 0.041 0.959 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.470 -5.880 -0.637 9.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.419 4.419 2 C 0.027 3.973 3 C -0.523 4.523 4 H 0.084 0.916 5 C -0.182 4.182 6 N -0.463 5.463 7 Si 0.787 3.213 8 H -0.201 1.201 9 H -0.189 1.189 10 H -0.183 1.183 11 C -0.101 4.101 12 C -0.119 4.119 13 H 0.061 0.939 14 C -0.184 4.184 15 C -0.084 4.084 16 N -0.310 5.310 17 C -0.073 4.073 18 H 0.059 0.941 19 H 0.079 0.921 20 H 0.085 0.915 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.118 0.882 27 H 0.157 0.843 28 H 0.060 0.940 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.419 -5.550 -1.508 9.387 hybrid contribution -0.694 0.696 0.882 1.321 sum 6.724 -4.854 -0.627 8.317 Atomic orbital electron populations 1.23127 0.95500 0.96188 1.27126 1.18820 0.93091 0.93100 0.92335 1.19295 1.01858 0.94298 1.36823 0.91640 1.26636 0.94867 1.04192 0.92535 1.69937 1.20297 1.31551 1.24504 0.85532 0.79231 0.77261 0.79310 1.20122 1.18852 1.18322 1.20621 0.98615 0.95225 0.95638 1.22144 0.98133 0.95638 0.95945 0.93852 1.23201 0.98878 0.95765 1.00564 1.23181 0.97111 0.89660 0.98497 1.62730 1.12701 1.09971 1.45561 1.22583 0.89282 0.96402 0.99028 0.94089 0.92148 0.91484 0.92434 0.93352 0.90503 0.90266 0.90894 0.88223 0.84270 0.94015 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.38 -21.90 12.91 67.08 0.87 -21.04 15 2 C 0.03 1.51 4.78 -20.16 -0.10 1.42 15 3 C -0.49 -26.81 7.15 23.22 0.17 -26.64 15 4 H 0.07 3.40 7.65 -2.91 -0.02 3.38 15 5 C 0.03 1.62 5.13 85.37 0.44 2.06 15 6 N -0.84 -47.73 11.00 21.90 0.24 -47.49 15 7 Si 0.96 41.07 29.59 68.60 2.03 43.10 15 8 H -0.28 -11.40 7.11 99.48 0.71 -10.70 15 9 H -0.26 -10.97 7.11 99.48 0.71 -10.26 15 10 H -0.26 -10.54 7.11 99.48 0.71 -9.83 15 11 C -0.06 -2.75 4.61 29.85 0.14 -2.62 15 12 C -0.10 -3.85 3.00 -9.91 -0.03 -3.88 15 13 H 0.04 1.91 8.14 -2.38 -0.02 1.89 15 14 C -0.15 -4.17 6.62 31.86 0.21 -3.96 15 15 C 0.04 1.17 7.55 86.71 0.65 1.83 15 16 N -0.68 -21.64 7.51 -501.89 -3.77 -25.41 15 17 C 0.06 2.27 6.72 86.45 0.58 2.85 15 18 H 0.04 2.25 8.06 -2.91 -0.02 2.23 15 19 H 0.06 3.78 6.28 -2.91 -0.02 3.76 15 20 H 0.27 14.55 8.29 -92.71 -0.77 13.78 15 21 H 0.06 2.34 8.12 -2.39 -0.02 2.32 15 22 H 0.05 2.00 8.04 -2.39 -0.02 1.98 15 23 H 0.08 2.02 7.86 -2.39 -0.02 2.01 15 24 H 0.08 2.07 8.14 -2.38 -0.02 2.05 15 25 H 0.07 1.94 8.14 -2.38 -0.02 1.92 15 26 H 0.10 1.99 8.14 -2.39 -0.02 1.97 15 27 H 0.34 9.56 8.92 -89.69 -0.80 8.76 15 28 H 0.04 1.85 8.14 -2.39 -0.02 1.84 15 29 H 0.07 3.14 5.68 -2.39 -0.01 3.13 15 Total: -1.00 -61.31 237.50 1.75 -59.56 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.32 Total: 20.22 kcal Atomic # 6 Polarization: -52.92 SS G_CDS: 2.93 Total: -49.99 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -3.53 Total: -72.90 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -61.31 1.75 -59.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260391820.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.335 kcal (2) G-P(sol) polarization free energy of solvation -61.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds