Wall clock time and date at job start Mon Mar 30 2020 02:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86801 * 120.00433 * 2 1 4 4 H 1.48504 * 109.47402 * 180.27403 * 3 2 1 5 5 H 1.48510 * 109.46645 * 300.27288 * 3 2 1 6 6 H 1.48502 * 109.47297 * 60.26821 * 3 2 1 7 7 C 1.38636 * 120.00061 * 180.26630 * 2 1 3 8 8 H 1.07998 * 120.00179 * 179.72621 * 7 2 1 9 9 O 1.34797 * 119.99336 * 359.73076 * 7 2 1 10 10 C 1.35870 * 116.99379 * 174.93178 * 9 7 2 11 11 C 1.35501 * 120.86845 * 5.57618 * 10 9 7 12 12 O 1.33876 * 120.74190 * 180.02562 * 11 10 9 13 13 C 1.33608 * 122.72862 * 359.97438 * 12 11 10 14 14 C 1.34767 * 121.69153 * 359.97438 * 13 12 11 15 15 C 1.41856 * 118.94971 * 359.77508 * 14 13 12 16 16 O 1.22141 * 121.19003 * 180.23215 * 15 14 13 17 17 H 0.97001 * 119.99512 * 359.73008 * 1 2 3 18 18 H 1.07998 * 119.62919 * 0.02562 * 11 10 9 19 19 H 1.07997 * 119.15350 * 180.02562 * 13 12 11 20 20 H 1.07998 * 120.52379 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7099 1.3463 -0.0067 5 1 1.8861 2.3992 -1.2093 6 1 1.8961 2.3936 1.2158 7 6 2.0089 -1.2006 -0.0056 8 1 3.0889 -1.2006 -0.0100 9 8 1.3348 -2.3679 -0.0055 10 6 2.0703 -3.5048 -0.1181 11 6 3.4246 -3.4601 -0.1121 12 8 4.1467 -4.5819 -0.2236 13 6 3.5900 -5.7904 -0.3449 14 6 2.2526 -5.9553 -0.3619 15 6 1.4185 -4.8140 -0.2430 16 8 0.2014 -4.9167 -0.2492 17 1 -0.4849 0.8401 0.0040 18 1 3.9270 -2.5090 -0.0162 19 1 4.2282 -6.6574 -0.4306 20 1 1.8227 -6.9411 -0.4603 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260393149.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:31 Heat of formation + Delta-G solvation = -81.498389 kcal Electronic energy + Delta-G solvation = -10481.565076 eV Core-core repulsion = 8224.145891 eV Total energy + Delta-G solvation = -2257.419185 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.45833 -39.83675 -38.98350 -34.44204 -33.31630 -31.56708 -27.76956 -24.80824 -24.66577 -20.69163 -19.64155 -18.48069 -17.69811 -17.12648 -16.78804 -15.96151 -15.60578 -15.39584 -14.95999 -14.60209 -14.47066 -13.66434 -13.06361 -12.78751 -12.08038 -11.67059 -10.99554 -10.67718 -10.38432 -9.10447 -8.52622 -6.24073 0.06726 0.44965 1.35624 1.45754 1.56330 1.80495 2.12776 2.48957 2.87708 3.00740 3.88095 3.91726 4.03531 4.59555 4.73162 4.98138 5.02772 5.33210 5.85898 6.43231 6.68761 6.89502 7.70391 8.70603 Molecular weight = 182.04amu Principal moments of inertia in cm(-1) A = 0.065648 B = 0.012752 C = 0.010727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.415581 B = 2195.206493 C = 2609.730642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.026 4.026 3 Si 1.031 2.969 4 H -0.238 1.238 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.423 4.423 8 H 0.116 0.884 9 O -0.213 6.213 10 C -0.082 4.082 11 C -0.077 4.077 12 O -0.192 6.192 13 C 0.160 3.840 14 C -0.359 4.359 15 C 0.385 3.615 16 O -0.557 6.557 17 H 0.275 0.725 18 H 0.207 0.793 19 H 0.270 0.730 20 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.180 -6.561 -0.684 14.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.224 4.224 3 Si 0.848 3.152 4 H -0.160 1.160 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.498 4.498 8 H 0.133 0.867 9 O -0.120 6.120 10 C -0.134 4.134 11 C -0.142 4.142 12 O -0.092 6.092 13 C 0.092 3.908 14 C -0.379 4.379 15 C 0.279 3.721 16 O -0.448 6.448 17 H 0.084 0.916 18 H 0.223 0.777 19 H 0.285 0.715 20 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 12.422 -6.396 -0.662 13.988 hybrid contribution -0.677 0.809 0.030 1.055 sum 11.745 -5.587 -0.632 13.021 Atomic orbital electron populations 1.70273 1.08683 1.29169 1.47355 1.26882 0.96852 1.03453 0.95227 0.84381 0.78657 0.73720 0.78411 1.16024 1.19574 1.19493 1.22017 0.92872 0.81261 1.53613 0.86681 1.84087 1.34899 1.11834 1.81200 1.22895 0.93050 0.91038 1.06400 1.23480 0.89622 0.88930 1.12191 1.82752 1.40017 1.13022 1.73385 1.25129 0.94442 0.86169 0.85074 1.22606 0.94649 0.99915 1.20713 1.19335 0.89472 0.88251 0.75065 1.90704 1.17789 1.89091 1.47169 0.91586 0.77681 0.71471 0.80287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.15 13.67 21.61 0.30 -57.86 14 2 C -0.03 -1.47 5.49 84.83 0.47 -1.01 14 3 Si 1.03 41.57 29.55 68.60 2.03 43.60 14 4 H -0.24 -8.36 7.11 99.48 0.71 -7.66 14 5 H -0.27 -10.60 7.11 99.48 0.71 -9.90 14 6 H -0.27 -10.54 7.11 99.48 0.71 -9.84 14 7 C -0.42 -24.27 9.49 67.91 0.64 -23.63 14 8 H 0.12 5.60 5.27 -2.91 -0.02 5.58 14 9 O -0.21 -13.50 9.71 -12.67 -0.12 -13.62 14 10 C -0.08 -4.18 6.85 23.87 0.16 -4.02 14 11 C -0.08 -2.98 10.57 67.19 0.71 -2.27 14 12 O -0.19 -5.39 9.72 8.08 0.08 -5.31 14 13 C 0.16 3.43 11.32 67.02 0.76 4.19 14 14 C -0.36 -11.25 10.04 22.37 0.22 -11.03 14 15 C 0.38 18.67 6.99 25.40 0.18 18.84 14 16 O -0.56 -32.63 17.85 5.30 0.09 -32.54 14 17 H 0.28 15.81 8.31 -92.71 -0.77 15.04 14 18 H 0.21 7.50 5.62 -2.91 -0.02 7.48 14 19 H 0.27 1.57 8.06 -2.91 -0.02 1.55 14 20 H 0.18 4.52 8.06 -2.91 -0.02 4.50 14 Total: -1.00 -84.67 197.90 6.79 -77.88 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.27 Total: 6.76 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 3.15 Total: -18.92 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.30 Total: -57.86 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: 0.05 Total: -51.47 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -84.67 6.79 -77.88 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393149.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.616 kcal (2) G-P(sol) polarization free energy of solvation -84.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds