Wall clock time and date at job start Mon Mar 30 2020 01:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35028 * 1 3 3 C 1.40079 * 119.99920 * 2 1 4 4 H 1.08000 * 119.99765 * 144.54614 * 3 2 1 5 5 C 1.40310 * 119.99959 * 324.54699 * 3 2 1 6 6 N 1.30692 * 119.99918 * 348.99626 * 5 3 2 7 7 Si 1.86796 * 119.99979 * 168.99857 * 5 3 2 8 8 H 1.48505 * 109.47201 * 59.99901 * 7 5 3 9 9 H 1.48502 * 109.47250 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47221 * 300.00158 * 7 5 3 11 11 C 1.50702 * 120.00179 * 180.02562 * 2 1 3 12 12 C 1.53116 * 109.51973 * 239.99605 * 11 2 1 13 13 C 1.53039 * 109.27521 * 182.43805 * 12 11 2 14 14 N 1.46842 * 109.52441 * 59.18289 * 13 12 11 15 15 C 1.46843 * 111.19661 * 298.25576 * 14 13 12 16 16 C 1.53037 * 109.52461 * 61.74410 * 15 14 13 17 17 H 1.08002 * 120.00389 * 354.42353 * 1 2 3 18 18 H 1.07998 * 120.00174 * 174.42513 * 1 2 3 19 19 H 0.97000 * 120.00231 * 179.97438 * 6 5 3 20 20 H 1.08998 * 109.57345 * 0.15185 * 11 2 1 21 21 H 1.09004 * 109.50463 * 62.50402 * 12 11 2 22 22 H 1.08994 * 109.50856 * 302.38039 * 12 11 2 23 23 H 1.08996 * 109.46361 * 299.16415 * 13 12 11 24 24 H 1.09005 * 109.46415 * 179.19914 * 13 12 11 25 25 H 1.00906 * 110.99998 * 62.35518 * 14 13 12 26 26 H 1.09003 * 109.46377 * 181.75726 * 15 14 13 27 27 H 1.08994 * 109.46465 * 301.72624 * 15 14 13 28 28 H 1.09003 * 109.50781 * 180.87794 * 16 15 14 29 29 H 1.09003 * 109.50588 * 60.75797 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 2.9805 1.2998 0.5425 5 6 1.5442 2.3156 -0.7048 6 7 0.5439 2.1593 -1.5313 7 14 2.2997 4.0066 -0.4620 8 1 3.7349 3.9667 -0.8414 9 1 1.5898 4.9931 -1.3153 10 1 2.1755 4.4042 0.9633 11 6 2.1038 -1.3051 -0.0006 12 6 2.9846 -1.3879 1.2491 13 6 3.7927 -2.6870 1.2126 14 7 4.6247 -2.7135 0.0029 15 6 3.7984 -2.6827 -1.2106 16 6 2.9905 -1.3835 -1.2465 17 1 -0.5401 0.9309 0.0909 18 1 -0.5400 -0.9309 -0.0909 19 1 0.1935 2.9215 -2.0183 20 1 1.3970 -2.1348 -0.0037 21 1 2.3555 -1.3756 2.1392 22 1 3.6650 -0.5367 1.2719 23 1 3.1118 -3.5381 1.2038 24 1 4.4315 -2.7423 2.0940 25 1 5.2913 -1.9560 0.0058 26 1 4.4414 -2.7349 -2.0893 27 1 3.1175 -3.5338 -1.2081 28 1 2.3657 -1.3679 -2.1394 29 1 3.6710 -0.5321 -1.2629 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260412681.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:11 Heat of formation + Delta-G solvation = -4.503049 kcal Electronic energy + Delta-G solvation = -11131.392616 eV Core-core repulsion = 9246.697051 eV Total energy + Delta-G solvation = -1884.695565 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.33318 -34.57317 -31.89613 -30.21226 -28.55916 -25.06939 -22.90692 -22.18435 -19.66937 -18.95680 -15.95428 -15.13089 -14.67573 -14.11985 -13.68814 -13.38211 -12.76794 -12.64408 -11.71962 -11.63870 -11.45146 -11.11841 -10.89027 -10.60818 -10.43964 -10.17165 -9.77550 -9.48735 -9.16876 -8.85023 -7.85234 -7.08333 -6.35234 -4.07146 3.13323 3.21279 3.24543 4.11359 4.25279 4.76882 5.30756 5.40616 5.70440 5.80661 5.90300 6.01784 6.08591 6.16603 6.37265 6.55954 6.70130 6.74425 7.04740 7.11428 7.23165 7.44599 7.46497 7.62163 7.75695 8.25385 8.45752 9.06164 9.30462 9.47784 10.67005 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.052286 B = 0.012871 C = 0.012127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.384055 B = 2174.863701 C = 2308.358096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 C 0.041 3.959 3 C -0.477 4.477 4 H 0.058 0.942 5 C 0.076 3.924 6 N -0.817 5.817 7 Si 0.894 3.106 8 H -0.272 1.272 9 H -0.283 1.283 10 H -0.270 1.270 11 C -0.046 4.046 12 C -0.141 4.141 13 C 0.055 3.945 14 N -0.690 5.690 15 C 0.054 3.946 16 C -0.135 4.135 17 H 0.080 0.920 18 H 0.040 0.960 19 H 0.269 0.731 20 H 0.046 0.954 21 H 0.058 0.942 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.337 0.663 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.567 -4.662 1.703 7.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.367 4.367 2 C 0.040 3.960 3 C -0.510 4.510 4 H 0.077 0.923 5 C -0.137 4.137 6 N -0.445 5.445 7 Si 0.720 3.280 8 H -0.197 1.197 9 H -0.208 1.208 10 H -0.195 1.195 11 C -0.065 4.065 12 C -0.180 4.180 13 C -0.074 4.074 14 N -0.318 5.318 15 C -0.076 4.076 16 C -0.174 4.174 17 H 0.098 0.902 18 H 0.059 0.941 19 H 0.080 0.920 20 H 0.065 0.935 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.153 0.847 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.502 -5.252 1.532 7.759 hybrid contribution -0.149 1.951 -0.078 1.958 sum 5.354 -3.301 1.454 6.456 Atomic orbital electron populations 1.23316 0.94738 0.96962 1.21715 1.18310 0.92755 0.90806 0.94113 1.18903 1.07151 0.95379 1.29539 0.92335 1.25690 0.94512 0.99756 0.93753 1.69775 1.22679 1.31359 1.20719 0.86637 0.79656 0.82801 0.78923 1.19674 1.20843 1.19463 1.20240 0.95497 0.97814 0.92935 1.22183 0.99281 0.97576 0.99001 1.22044 0.95556 0.97561 0.92282 1.60797 1.18001 1.50641 1.02346 1.22071 0.95634 0.97744 0.92107 1.22123 0.99127 0.97236 0.98921 0.90188 0.94149 0.91994 0.93514 0.92286 0.91744 0.91694 0.91704 0.84656 0.91667 0.91771 0.92188 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.33 -9.12 12.86 29.59 0.38 -8.74 15 2 C 0.04 1.10 4.48 -105.07 -0.47 0.63 15 3 C -0.48 -13.07 7.98 -38.11 -0.30 -13.37 15 4 H 0.06 1.55 6.91 -52.49 -0.36 1.19 15 5 C 0.08 2.07 5.16 -17.26 -0.09 1.98 15 6 N -0.82 -23.19 11.41 55.57 0.63 -22.56 15 7 Si 0.89 20.34 29.58 -169.99 -5.03 15.31 15 8 H -0.27 -6.06 7.11 56.52 0.40 -5.65 15 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 11 C -0.05 -1.01 2.42 -91.65 -0.22 -1.23 15 12 C -0.14 -2.68 5.21 -26.65 -0.14 -2.82 15 13 C 0.06 0.87 6.55 -3.84 -0.03 0.85 15 14 N -0.69 -10.84 6.87 -113.82 -0.78 -11.62 15 15 C 0.05 0.88 6.55 -3.84 -0.03 0.86 15 16 C -0.13 -2.71 5.21 -26.65 -0.14 -2.85 15 17 H 0.08 2.39 6.85 -52.49 -0.36 2.03 15 18 H 0.04 1.06 7.91 -52.49 -0.42 0.65 15 19 H 0.27 7.12 8.29 -40.82 -0.34 6.78 15 20 H 0.05 1.02 7.85 -51.93 -0.41 0.61 15 21 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 22 H 0.06 1.28 7.04 -51.93 -0.37 0.92 15 23 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.06 0.91 8.14 -51.93 -0.42 0.48 15 25 H 0.34 5.05 8.86 -39.29 -0.35 4.70 15 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 28 H 0.06 1.28 8.14 -51.93 -0.42 0.85 15 29 H 0.07 1.44 7.66 -51.93 -0.40 1.04 15 LS Contribution 235.81 15.07 3.55 3.55 Total: -1.00 -28.60 235.81 -6.98 -35.58 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.33 Total: 4.43 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -1.03 Total: -24.69 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: -0.15 Total: -34.18 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.60 -6.98 -35.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412681.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.078 kcal (2) G-P(sol) polarization free energy of solvation -28.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds