Wall clock time and date at job start Mon Mar 30 2020 01:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35028 * 1 3 3 C 1.40079 * 119.99920 * 2 1 4 4 H 1.08000 * 119.99765 * 144.54614 * 3 2 1 5 5 C 1.40310 * 119.99959 * 324.54699 * 3 2 1 6 6 N 1.30692 * 119.99918 * 348.99626 * 5 3 2 7 7 Si 1.86796 * 119.99979 * 168.99857 * 5 3 2 8 8 H 1.48505 * 109.47201 * 59.99901 * 7 5 3 9 9 H 1.48502 * 109.47250 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47221 * 300.00158 * 7 5 3 11 11 C 1.50702 * 120.00179 * 180.02562 * 2 1 3 12 12 C 1.53116 * 109.51973 * 239.99605 * 11 2 1 13 13 C 1.53039 * 109.27521 * 182.43805 * 12 11 2 14 14 N 1.46842 * 109.52441 * 59.18289 * 13 12 11 15 15 C 1.46843 * 111.19661 * 298.25576 * 14 13 12 16 16 C 1.53037 * 109.52461 * 61.74410 * 15 14 13 17 17 H 1.08002 * 120.00389 * 354.42353 * 1 2 3 18 18 H 1.07998 * 120.00174 * 174.42513 * 1 2 3 19 19 H 0.97000 * 120.00231 * 179.97438 * 6 5 3 20 20 H 1.08998 * 109.57345 * 0.15185 * 11 2 1 21 21 H 1.09004 * 109.50463 * 62.50402 * 12 11 2 22 22 H 1.08994 * 109.50856 * 302.38039 * 12 11 2 23 23 H 1.08996 * 109.46361 * 299.16415 * 13 12 11 24 24 H 1.09005 * 109.46415 * 179.19914 * 13 12 11 25 25 H 1.00906 * 110.99998 * 62.35518 * 14 13 12 26 26 H 1.09003 * 109.46377 * 181.75726 * 15 14 13 27 27 H 1.08994 * 109.46465 * 301.72624 * 15 14 13 28 28 H 1.09003 * 109.50781 * 180.87794 * 16 15 14 29 29 H 1.09003 * 109.50588 * 60.75797 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 2.9805 1.2998 0.5425 5 6 1.5442 2.3156 -0.7048 6 7 0.5439 2.1593 -1.5313 7 14 2.2997 4.0066 -0.4620 8 1 3.7349 3.9667 -0.8414 9 1 1.5898 4.9931 -1.3153 10 1 2.1755 4.4042 0.9633 11 6 2.1038 -1.3051 -0.0006 12 6 2.9846 -1.3879 1.2491 13 6 3.7927 -2.6870 1.2126 14 7 4.6247 -2.7135 0.0029 15 6 3.7984 -2.6827 -1.2106 16 6 2.9905 -1.3835 -1.2465 17 1 -0.5401 0.9309 0.0909 18 1 -0.5400 -0.9309 -0.0909 19 1 0.1935 2.9215 -2.0183 20 1 1.3970 -2.1348 -0.0037 21 1 2.3555 -1.3756 2.1392 22 1 3.6650 -0.5367 1.2719 23 1 3.1118 -3.5381 1.2038 24 1 4.4315 -2.7423 2.0940 25 1 5.2913 -1.9560 0.0058 26 1 4.4414 -2.7349 -2.0893 27 1 3.1175 -3.5338 -1.2081 28 1 2.3657 -1.3679 -2.1394 29 1 3.6710 -0.5321 -1.2629 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260412681.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:11 Heat of formation + Delta-G solvation = -23.312033 kcal Electronic energy + Delta-G solvation = -11132.208235 eV Core-core repulsion = 9246.697051 eV Total energy + Delta-G solvation = -1885.511184 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.87580 -36.49109 -33.78100 -31.64965 -30.39791 -27.21777 -24.46399 -23.62913 -21.25489 -20.97848 -17.76608 -17.08230 -16.35188 -15.48472 -15.33716 -15.03285 -14.63751 -14.18401 -13.61496 -13.30638 -13.06508 -12.85935 -12.54765 -12.35180 -12.12853 -11.93675 -11.37108 -11.31421 -11.10416 -10.90479 -9.25242 -9.19158 -8.44711 -6.26458 1.30973 1.36603 1.46330 2.06523 2.28779 3.27055 3.48365 3.95289 4.22741 4.31679 4.37613 4.57810 4.59189 4.74210 4.92734 5.03418 5.15655 5.19151 5.21886 5.28419 5.44080 5.49423 5.57112 6.06162 6.12075 6.26550 6.52528 6.92113 7.15399 7.37533 8.58700 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.052286 B = 0.012871 C = 0.012127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.384055 B = 2174.863701 C = 2308.358096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.362 4.362 2 C 0.042 3.958 3 C -0.500 4.500 4 H 0.064 0.936 5 C 0.027 3.973 6 N -0.850 5.850 7 Si 0.969 3.031 8 H -0.259 1.259 9 H -0.276 1.276 10 H -0.265 1.265 11 C -0.050 4.050 12 C -0.134 4.134 13 C 0.064 3.936 14 N -0.682 5.682 15 C 0.065 3.935 16 C -0.127 4.127 17 H 0.050 0.950 18 H 0.045 0.955 19 H 0.275 0.725 20 H 0.044 0.956 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.343 0.657 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.547 -4.875 2.067 9.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.402 4.402 2 C 0.040 3.960 3 C -0.532 4.532 4 H 0.083 0.917 5 C -0.184 4.184 6 N -0.479 5.479 7 Si 0.791 3.209 8 H -0.183 1.183 9 H -0.201 1.201 10 H -0.190 1.190 11 C -0.068 4.068 12 C -0.173 4.173 13 C -0.066 4.066 14 N -0.310 5.310 15 C -0.065 4.065 16 C -0.167 4.167 17 H 0.069 0.931 18 H 0.064 0.936 19 H 0.085 0.915 20 H 0.062 0.938 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.089 0.911 24 H 0.110 0.890 25 H 0.161 0.839 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.490 -5.482 1.900 9.474 hybrid contribution -0.787 2.031 -0.211 2.188 sum 6.703 -3.451 1.689 7.726 Atomic orbital electron populations 1.23151 0.95546 0.95840 1.25689 1.18813 0.92695 0.93098 0.91384 1.19238 1.07551 0.96344 1.30086 0.91742 1.26653 0.94793 1.03935 0.92998 1.69890 1.23897 1.32866 1.21215 0.85474 0.79219 0.77244 0.78988 1.18313 1.20096 1.18953 1.20248 0.95971 0.95052 0.95561 1.22115 0.98792 0.99325 0.97044 1.22039 0.95650 0.95533 0.93390 1.60826 1.17571 1.50716 1.01913 1.22007 0.95640 0.95381 0.93452 1.22049 0.98549 0.99113 0.96974 0.93124 0.93605 0.91522 0.93793 0.92650 0.92777 0.91062 0.89030 0.83927 0.89509 0.91098 0.94264 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.36 -20.99 12.86 67.08 0.86 -20.13 15 2 C 0.04 2.25 4.48 -20.16 -0.09 2.16 15 3 C -0.50 -27.62 7.98 23.22 0.19 -27.43 15 4 H 0.06 3.41 6.91 -2.91 -0.02 3.39 15 5 C 0.03 1.47 5.16 85.37 0.44 1.91 15 6 N -0.85 -49.16 11.41 21.89 0.25 -48.91 15 7 Si 0.97 41.45 29.58 68.60 2.03 43.48 15 8 H -0.26 -10.51 7.11 99.48 0.71 -9.80 15 9 H -0.28 -11.43 7.11 99.48 0.71 -10.72 15 10 H -0.26 -11.09 7.11 99.48 0.71 -10.38 15 11 C -0.05 -2.16 2.42 -11.46 -0.03 -2.19 15 12 C -0.13 -4.88 5.21 30.65 0.16 -4.72 15 13 C 0.06 1.81 6.55 86.33 0.57 2.37 15 14 N -0.68 -19.18 6.87 -514.03 -3.53 -22.71 15 15 C 0.06 1.96 6.55 86.33 0.57 2.53 15 16 C -0.13 -5.05 5.21 30.65 0.16 -4.89 15 17 H 0.05 3.17 6.85 -2.91 -0.02 3.15 15 18 H 0.05 2.51 7.91 -2.91 -0.02 2.49 15 19 H 0.27 14.71 8.29 -92.71 -0.77 13.94 15 20 H 0.04 1.92 7.85 -2.39 -0.02 1.90 15 21 H 0.05 2.04 8.14 -2.38 -0.02 2.02 15 22 H 0.05 2.08 7.04 -2.39 -0.02 2.06 15 23 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 24 H 0.09 2.19 8.14 -2.38 -0.02 2.17 15 25 H 0.34 9.17 8.86 -89.69 -0.79 8.37 15 26 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 27 H 0.07 2.08 8.14 -2.39 -0.02 2.07 15 28 H 0.04 1.67 8.14 -2.39 -0.02 1.66 15 29 H 0.05 2.18 7.66 -2.39 -0.02 2.16 15 Total: -1.00 -61.71 235.81 1.89 -59.82 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.32 Total: 18.69 kcal Atomic # 6 Polarization: -53.20 SS G_CDS: 2.82 Total: -50.38 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -3.28 Total: -71.61 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -61.71 1.89 -59.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412681.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.507 kcal (2) G-P(sol) polarization free energy of solvation -61.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds