Wall clock time and date at job start Mon Mar 30 2020 02:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.50304 * 112.01399 * 2 1 4 4 C 1.54940 * 103.37186 * 159.68056 * 3 2 1 5 5 C 1.54549 * 102.94346 * 322.40800 * 4 3 2 6 6 H 1.09001 * 118.10520 * 242.44039 * 5 4 3 7 7 C 1.52942 * 118.19892 * 85.57109 * 5 4 3 8 8 H 1.09000 * 117.45680 * 160.65056 * 7 5 4 9 9 C 1.53008 * 117.43149 * 15.88425 * 7 5 4 10 10 C 1.50698 * 109.47061 * 174.51506 * 9 7 5 11 11 H 1.08003 * 119.99952 * 0.02562 * 10 9 7 12 12 C 1.37878 * 119.99856 * 179.97438 * 10 9 7 13 13 N 1.31509 * 119.99819 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99742 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47483 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47173 * 120.00386 * 14 12 10 17 17 H 1.48500 * 109.47040 * 239.99908 * 14 12 10 18 18 C 1.47946 * 110.99634 * 116.88788 * 2 1 3 19 19 H 1.09002 * 117.37446 * 354.64723 * 18 2 1 20 20 H 1.08998 * 109.47225 * 303.11074 * 1 2 3 21 21 H 1.09006 * 109.46868 * 63.10779 * 1 2 3 22 22 H 1.08997 * 109.47459 * 183.10774 * 1 2 3 23 23 H 1.08994 * 110.70918 * 41.14854 * 3 2 1 24 24 H 1.09007 * 110.49052 * 278.11336 * 3 2 1 25 25 H 1.09001 * 110.71985 * 204.04001 * 4 3 2 26 26 H 1.09008 * 110.71844 * 80.77418 * 4 3 2 27 27 H 1.08995 * 109.46787 * 294.51778 * 9 7 5 28 28 H 1.09000 * 109.46761 * 54.51740 * 9 7 5 29 29 H 0.97008 * 119.99411 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0324 1.3935 0.0000 4 6 3.4772 1.1958 0.5234 5 6 3.3090 0.0977 1.5979 6 1 3.5575 0.3465 2.6297 7 6 3.3368 -1.3638 1.1482 8 1 3.5419 -2.1192 1.9067 9 6 3.8920 -1.6618 -0.2461 10 6 3.9614 -3.1532 -0.4510 11 1 3.6410 -3.8216 0.3345 12 6 4.4327 -3.6643 -1.6416 13 7 4.8223 -2.8503 -2.5983 14 14 4.5180 -5.5129 -1.8958 15 1 4.0254 -6.2035 -0.6769 16 1 3.6727 -5.8925 -3.0562 17 1 5.9244 -5.9124 -2.1562 18 6 1.9991 -0.6247 1.2319 19 1 1.2789 -0.9119 1.9981 20 1 -0.3633 0.5614 0.8608 21 1 -0.3633 0.4649 -0.9166 22 1 -0.3634 -1.0261 0.0557 23 1 1.4651 2.0385 0.6709 24 1 2.0418 1.8012 -1.0109 25 1 3.8555 2.1161 0.9684 26 1 4.1341 0.8549 -0.2769 27 1 3.2384 -1.2216 -0.9991 28 1 4.8910 -1.2356 -0.3381 29 1 5.1543 -3.2099 -3.4358 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260414684.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:31 Heat of formation + Delta-G solvation = 32.580554 kcal Electronic energy + Delta-G solvation = -11000.555632 eV Core-core repulsion = 9117.468132 eV Total energy + Delta-G solvation = -1883.087499 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.26410 -33.67967 -32.34675 -30.15339 -27.81461 -24.92782 -23.19570 -21.68641 -19.66724 -18.13437 -16.50731 -15.49878 -14.69785 -14.20054 -13.73265 -13.05534 -12.93826 -12.07482 -12.02416 -11.60682 -11.37731 -11.07032 -10.87736 -10.65645 -10.58412 -10.30324 -9.66324 -9.28270 -9.05751 -8.67057 -8.14712 -7.59866 -5.85047 -3.84555 3.39304 3.46310 3.50500 4.16008 4.54334 4.59213 5.25252 5.41751 5.50015 5.54058 5.66679 5.74539 5.80677 5.82925 5.96618 6.10923 6.17713 6.37303 6.39763 6.68693 6.81670 7.19968 7.33407 7.65445 7.86109 8.07584 8.27908 8.61101 9.22141 9.76636 11.26465 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.055277 B = 0.011301 C = 0.010957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.415565 B = 2477.099834 C = 2554.911742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.483 5.483 3 C 0.039 3.961 4 C -0.094 4.094 5 C -0.195 4.195 6 H 0.097 0.903 7 C -0.078 4.078 8 H 0.095 0.905 9 C 0.045 3.955 10 C -0.509 4.509 11 H 0.052 0.948 12 C 0.055 3.945 13 N -0.896 5.896 14 Si 0.888 3.112 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.286 1.286 18 C -0.020 4.020 19 H 0.094 0.906 20 H 0.017 0.983 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.036 0.964 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.015 0.985 29 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.494 6.846 6.009 10.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.205 5.205 3 C -0.088 4.088 4 C -0.132 4.132 5 C -0.214 4.214 6 H 0.115 0.885 7 C -0.097 4.097 8 H 0.113 0.887 9 C 0.008 3.992 10 C -0.547 4.547 11 H 0.070 0.930 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.716 3.284 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.212 1.212 18 C -0.129 4.129 19 H 0.111 0.889 20 H 0.036 0.964 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.033 0.967 29 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.315 6.573 5.350 10.004 hybrid contribution -0.356 -0.599 0.608 0.925 sum -5.671 5.974 5.958 10.165 Atomic orbital electron populations 1.22407 0.88571 1.01750 0.99790 1.64667 1.06798 1.13524 1.35545 1.23737 0.94893 0.89861 1.00268 1.22007 0.96304 0.96661 0.98214 1.23711 1.03762 0.95211 0.98705 0.88455 1.22980 0.94730 0.89990 1.02023 0.88743 1.18754 0.95689 0.96026 0.88702 1.21299 1.41400 0.92241 0.99768 0.93020 1.24977 0.95904 0.97441 0.96207 1.69983 1.44195 1.33940 1.05460 0.86604 0.77451 0.86327 0.77989 1.19915 1.21170 1.21215 1.23575 0.90409 1.06449 0.92483 0.88863 0.96423 0.91749 0.91308 0.94552 0.90408 0.91770 0.89563 0.93442 0.96699 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.58 60.06 0.58 0.94 15 2 N -0.48 -9.17 4.27 -229.13 -0.98 -10.15 15 3 C 0.04 0.65 6.65 -0.89 -0.01 0.64 15 4 C -0.09 -1.62 6.54 -24.89 -0.16 -1.78 15 5 C -0.19 -3.54 7.02 -89.32 -0.63 -4.17 15 6 H 0.10 1.55 8.14 -51.93 -0.42 1.13 15 7 C -0.08 -1.71 5.67 -90.61 -0.51 -2.23 15 8 H 0.09 2.01 8.00 -51.93 -0.42 1.60 15 9 C 0.05 1.21 3.91 -27.88 -0.11 1.10 15 10 C -0.51 -14.88 9.08 -34.44 -0.31 -15.20 15 11 H 0.05 1.48 7.67 -52.48 -0.40 1.07 15 12 C 0.05 1.62 5.46 -17.82 -0.10 1.53 15 13 N -0.90 -27.65 13.29 55.43 0.74 -26.91 15 14 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 15 15 H -0.27 -6.74 7.11 56.52 0.40 -6.34 15 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 17 H -0.29 -7.08 7.11 56.52 0.40 -6.67 15 18 C -0.02 -0.39 6.40 -66.58 -0.43 -0.82 15 19 H 0.09 1.62 7.98 -51.93 -0.41 1.20 15 20 H 0.02 0.24 8.11 -51.93 -0.42 -0.18 15 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 23 H 0.04 0.53 8.04 -51.93 -0.42 0.11 15 24 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 15 26 H 0.09 1.70 6.89 -51.92 -0.36 1.35 15 27 H 0.05 1.37 6.89 -51.93 -0.36 1.01 15 28 H 0.01 0.43 7.86 -51.93 -0.41 0.02 15 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 LS Contribution 239.19 15.07 3.60 3.60 Total: -1.00 -31.23 239.19 -7.78 -39.01 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -4.44 Total: -2.85 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -1.68 Total: -19.97 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.24 Total: -37.06 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -31.23 -7.78 -39.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414684.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.589 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds