Wall clock time and date at job start Mon Mar 30 2020 02:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.50304 * 112.01399 * 2 1 4 4 C 1.54940 * 103.37186 * 159.68056 * 3 2 1 5 5 C 1.54549 * 102.94346 * 322.40800 * 4 3 2 6 6 H 1.09001 * 118.10520 * 242.44039 * 5 4 3 7 7 C 1.52942 * 118.19892 * 85.57109 * 5 4 3 8 8 H 1.09000 * 117.45680 * 160.65056 * 7 5 4 9 9 C 1.53008 * 117.43149 * 15.88425 * 7 5 4 10 10 C 1.50698 * 109.47061 * 174.51506 * 9 7 5 11 11 H 1.08003 * 119.99952 * 0.02562 * 10 9 7 12 12 C 1.37878 * 119.99856 * 179.97438 * 10 9 7 13 13 N 1.31509 * 119.99819 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99742 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47483 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47173 * 120.00386 * 14 12 10 17 17 H 1.48500 * 109.47040 * 239.99908 * 14 12 10 18 18 C 1.47946 * 110.99634 * 116.88788 * 2 1 3 19 19 H 1.09002 * 117.37446 * 354.64723 * 18 2 1 20 20 H 1.08998 * 109.47225 * 303.11074 * 1 2 3 21 21 H 1.09006 * 109.46868 * 63.10779 * 1 2 3 22 22 H 1.08997 * 109.47459 * 183.10774 * 1 2 3 23 23 H 1.08994 * 110.70918 * 41.14854 * 3 2 1 24 24 H 1.09007 * 110.49052 * 278.11336 * 3 2 1 25 25 H 1.09001 * 110.71985 * 204.04001 * 4 3 2 26 26 H 1.09008 * 110.71844 * 80.77418 * 4 3 2 27 27 H 1.08995 * 109.46787 * 294.51778 * 9 7 5 28 28 H 1.09000 * 109.46761 * 54.51740 * 9 7 5 29 29 H 0.97008 * 119.99411 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0324 1.3935 0.0000 4 6 3.4772 1.1958 0.5234 5 6 3.3090 0.0977 1.5979 6 1 3.5575 0.3465 2.6297 7 6 3.3368 -1.3638 1.1482 8 1 3.5419 -2.1192 1.9067 9 6 3.8920 -1.6618 -0.2461 10 6 3.9614 -3.1532 -0.4510 11 1 3.6410 -3.8216 0.3345 12 6 4.4327 -3.6643 -1.6416 13 7 4.8223 -2.8503 -2.5983 14 14 4.5180 -5.5129 -1.8958 15 1 4.0254 -6.2035 -0.6769 16 1 3.6727 -5.8925 -3.0562 17 1 5.9244 -5.9124 -2.1562 18 6 1.9991 -0.6247 1.2319 19 1 1.2789 -0.9119 1.9981 20 1 -0.3633 0.5614 0.8608 21 1 -0.3633 0.4649 -0.9166 22 1 -0.3634 -1.0261 0.0557 23 1 1.4651 2.0385 0.6709 24 1 2.0418 1.8012 -1.0109 25 1 3.8555 2.1161 0.9684 26 1 4.1341 0.8549 -0.2769 27 1 3.2384 -1.2216 -0.9991 28 1 4.8910 -1.2356 -0.3381 29 1 5.1543 -3.2099 -3.4358 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260414684.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:31 Heat of formation + Delta-G solvation = 12.539457 kcal Electronic energy + Delta-G solvation = -11001.424679 eV Core-core repulsion = 9117.468132 eV Total energy + Delta-G solvation = -1883.956546 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.72781 -35.47835 -34.25318 -31.60972 -29.83602 -26.21369 -25.29107 -23.16680 -21.08048 -19.79916 -18.58089 -17.12630 -16.47786 -15.93300 -15.09278 -14.61280 -14.40297 -13.97468 -13.62295 -13.35769 -12.98068 -12.70924 -12.60310 -12.32667 -12.16694 -12.06933 -11.44730 -11.17040 -10.94195 -10.50172 -10.26557 -8.98465 -8.11881 -6.20453 1.40258 1.41175 1.54091 2.44717 2.72262 3.16061 3.21275 3.89011 4.01424 4.16519 4.30618 4.38786 4.51601 4.54367 4.65386 4.79367 4.92198 4.99937 5.05238 5.11825 5.24879 5.45588 5.62616 5.83447 6.00385 6.09450 6.31814 6.37550 6.97144 7.46007 9.00102 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.055277 B = 0.011301 C = 0.010957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.415565 B = 2477.099834 C = 2554.911742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.525 5.525 3 C 0.044 3.956 4 C -0.097 4.097 5 C -0.173 4.173 6 H 0.130 0.870 7 C -0.120 4.120 8 H 0.095 0.905 9 C 0.061 3.939 10 C -0.532 4.532 11 H 0.053 0.947 12 C -0.003 4.003 13 N -0.933 5.933 14 Si 0.962 3.038 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.278 1.278 18 C -0.009 4.009 19 H 0.117 0.883 20 H 0.042 0.958 21 H 0.073 0.927 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.047 0.953 27 H 0.019 0.981 28 H -0.021 1.021 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.508 7.056 7.238 12.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.249 5.249 3 C -0.082 4.082 4 C -0.135 4.135 5 C -0.192 4.192 6 H 0.148 0.852 7 C -0.139 4.139 8 H 0.113 0.887 9 C 0.024 3.976 10 C -0.570 4.570 11 H 0.071 0.929 12 C -0.200 4.200 13 N -0.574 5.574 14 Si 0.787 3.213 15 H -0.188 1.188 16 H -0.205 1.205 17 H -0.204 1.204 18 C -0.118 4.118 19 H 0.135 0.865 20 H 0.060 0.940 21 H 0.092 0.908 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.118 0.882 26 H 0.066 0.934 27 H 0.037 0.963 28 H -0.002 1.002 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.339 6.792 6.590 11.391 hybrid contribution -0.033 -0.624 0.191 0.653 sum -6.372 6.169 6.781 11.164 Atomic orbital electron populations 1.22421 0.86574 1.01906 1.01380 1.64540 1.09014 1.15286 1.36063 1.23738 0.94303 0.89103 1.01060 1.22064 0.96571 0.97801 0.97075 1.23829 1.02334 0.92782 1.00245 0.85234 1.22727 0.98801 0.93048 0.99305 0.88707 1.18409 0.93343 0.94471 0.91381 1.21742 1.41450 0.93719 1.00086 0.92869 1.25934 0.95331 1.02870 0.95850 1.70125 1.44927 1.36371 1.06022 0.85444 0.77787 0.79816 0.78239 1.18774 1.20528 1.20357 1.23608 0.90295 1.04862 0.92999 0.86550 0.93963 0.90820 0.92023 0.91468 0.90434 0.88225 0.93418 0.96260 1.00243 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 9.58 127.69 1.22 1.96 15 2 N -0.53 -19.31 4.27 -878.82 -3.75 -23.06 15 3 C 0.04 1.36 6.65 86.30 0.57 1.94 15 4 C -0.10 -3.22 6.54 31.78 0.21 -3.01 15 5 C -0.17 -5.97 7.02 -9.95 -0.07 -6.04 15 6 H 0.13 3.65 8.14 -2.39 -0.02 3.63 15 7 C -0.12 -5.26 5.67 -10.79 -0.06 -5.33 15 8 H 0.09 4.07 8.00 -2.39 -0.02 4.05 15 9 C 0.06 3.41 3.91 29.85 0.12 3.53 15 10 C -0.53 -31.92 9.08 25.60 0.23 -31.69 15 11 H 0.05 3.08 7.67 -2.91 -0.02 3.06 15 12 C 0.00 -0.18 5.46 84.66 0.46 0.28 15 13 N -0.93 -59.21 13.29 21.45 0.28 -58.92 15 14 Si 0.96 46.21 29.54 68.60 2.03 48.24 15 15 H -0.26 -12.09 7.11 99.48 0.71 -11.38 15 16 H -0.28 -13.08 7.11 99.48 0.71 -12.38 15 17 H -0.28 -12.91 7.11 99.48 0.71 -12.21 15 18 C -0.01 -0.32 6.40 45.07 0.29 -0.03 15 19 H 0.12 3.68 7.98 -2.39 -0.02 3.67 15 20 H 0.04 1.00 8.11 -2.39 -0.02 0.98 15 21 H 0.07 1.94 8.14 -2.38 -0.02 1.92 15 22 H 0.06 1.82 8.14 -2.39 -0.02 1.80 15 23 H 0.07 1.67 8.04 -2.39 -0.02 1.65 15 24 H 0.08 2.35 8.14 -2.38 -0.02 2.33 15 25 H 0.10 2.55 8.14 -2.39 -0.02 2.53 15 26 H 0.05 1.94 6.89 -2.38 -0.02 1.92 15 27 H 0.02 1.16 6.89 -2.39 -0.02 1.14 15 28 H -0.02 -1.26 7.86 -2.39 -0.02 -1.28 15 29 H 0.26 15.46 8.31 -92.70 -0.77 14.69 15 Total: -1.00 -68.64 239.19 2.63 -66.01 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 1.10 Total: 6.13 kcal Atomic # 6 Polarization: -41.37 SS G_CDS: 2.97 Total: -38.39 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -3.47 Total: -81.98 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -68.64 2.63 -66.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414684.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.545 kcal (2) G-P(sol) polarization free energy of solvation -68.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds