Wall clock time and date at job start Mon Mar 30 2020 02:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48535 * 110.99962 * 2 1 4 4 C 1.54941 * 103.22733 * 200.27933 * 3 2 1 5 5 C 1.54597 * 102.92002 * 37.41292 * 4 3 2 6 6 H 1.09004 * 110.38790 * 97.00036 * 5 4 3 7 7 C 1.50696 * 110.30806 * 219.12581 * 5 4 3 8 8 C 1.35039 * 119.99772 * 230.59062 * 7 5 4 9 9 C 1.40065 * 120.00262 * 6.14130 * 8 7 5 10 10 H 1.08006 * 119.99746 * 5.70209 * 9 8 7 11 11 C 1.40306 * 120.00388 * 185.71155 * 9 8 7 12 12 N 1.30686 * 120.00222 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99687 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47398 * 90.00284 * 13 11 9 15 15 H 1.48500 * 109.47336 * 210.00726 * 13 11 9 16 16 H 1.48506 * 109.47306 * 330.00394 * 13 11 9 17 17 C 1.47898 * 111.00138 * 242.60307 * 2 1 3 18 18 H 1.09005 * 109.46961 * 177.39597 * 1 2 3 19 19 H 1.09004 * 109.47290 * 297.39435 * 1 2 3 20 20 H 1.09004 * 109.47326 * 57.39467 * 1 2 3 21 21 H 1.08997 * 110.66829 * 318.71362 * 3 2 1 22 22 H 1.09002 * 110.66517 * 81.68010 * 3 2 1 23 23 H 1.09003 * 110.72225 * 279.05422 * 4 3 2 24 24 H 1.08997 * 110.72183 * 155.77488 * 4 3 2 25 25 H 1.08001 * 120.00437 * 50.86316 * 7 5 4 26 26 H 1.07998 * 119.99497 * 186.14549 * 8 7 5 27 27 H 0.97005 * 119.99950 * 179.97438 * 12 11 9 28 28 H 1.09003 * 109.91836 * 26.49061 * 17 2 1 29 29 H 1.08994 * 110.08709 * 265.28843 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 -0.5228 5 6 3.2982 0.1053 -1.5931 6 1 3.2141 0.5471 -2.5860 7 6 4.4716 -0.8387 -1.5391 8 6 5.1486 -1.1395 -2.6681 9 6 4.8441 -0.4780 -3.8646 10 1 4.1339 0.3356 -3.8662 11 6 5.4615 -0.8726 -5.0612 12 7 5.1771 -0.2557 -6.1776 13 14 6.6902 -2.2796 -5.0583 14 1 5.9768 -3.5604 -5.2945 15 1 7.6912 -2.0649 -6.1340 16 1 7.3797 -2.3321 -3.7440 17 6 1.9990 -0.6353 -1.2259 18 1 -0.3633 -1.0267 -0.0467 19 1 -0.3634 0.4729 0.9124 20 1 -0.3634 0.5538 -0.8657 21 1 1.4237 2.0205 -0.6729 22 1 2.0013 1.7987 1.0092 23 1 4.1115 0.8836 0.2788 24 1 3.8122 2.1352 -0.9715 25 1 4.7684 -1.2781 -0.5982 26 1 5.9248 -1.8902 -2.6485 27 1 5.6042 -0.5283 -7.0048 28 1 1.2758 -0.5403 -2.0359 29 1 2.2116 -1.6880 -1.0400 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260440093.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:39 Heat of formation + Delta-G solvation = 5.289028 kcal Electronic energy + Delta-G solvation = -10745.789622 eV Core-core repulsion = 8861.518674 eV Total energy + Delta-G solvation = -1884.270949 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.27307 -34.37692 -32.47376 -30.35669 -28.00554 -25.49083 -24.13704 -20.51945 -20.22426 -18.58539 -16.75002 -15.39246 -14.96139 -14.23577 -13.74609 -13.45599 -12.79730 -12.53347 -12.28867 -11.57068 -11.35892 -11.05347 -11.01831 -10.64019 -10.46343 -10.29403 -10.05717 -9.57880 -9.41764 -8.78032 -7.93937 -7.74368 -6.74702 -4.21427 3.00069 3.12890 3.17624 3.74172 4.00372 4.57328 5.31286 5.41182 5.53400 5.63720 5.80767 5.94209 6.02277 6.06099 6.12970 6.48250 6.57701 6.63433 6.82324 6.97456 7.05813 7.20476 7.40647 7.53896 7.72468 7.85817 8.47528 8.56933 9.01763 9.18841 10.29728 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.070551 B = 0.009520 C = 0.009393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.778105 B = 2940.550393 C = 2980.116009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.526 5.526 3 C 0.032 3.968 4 C -0.115 4.115 5 C -0.023 4.023 6 H 0.077 0.923 7 C -0.388 4.388 8 C 0.005 3.995 9 C -0.451 4.451 10 H 0.088 0.912 11 C 0.075 3.925 12 N -0.829 5.829 13 Si 0.902 3.098 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.254 1.254 17 C 0.044 3.956 18 H 0.063 0.937 19 H 0.060 0.940 20 H 0.022 0.978 21 H 0.036 0.964 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.280 0.720 28 H 0.030 0.970 29 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.989 0.298 6.136 7.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.250 5.250 3 C -0.096 4.096 4 C -0.153 4.153 5 C -0.042 4.042 6 H 0.095 0.905 7 C -0.410 4.410 8 C -0.016 4.016 9 C -0.481 4.481 10 H 0.106 0.894 11 C -0.140 4.140 12 N -0.456 5.456 13 Si 0.727 3.273 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.178 1.178 17 C -0.083 4.083 18 H 0.082 0.918 19 H 0.079 0.921 20 H 0.041 0.959 21 H 0.054 0.946 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.048 0.952 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.821 0.059 6.296 7.365 hybrid contribution 0.181 -0.203 -0.903 0.943 sum -3.641 -0.144 5.393 6.508 Atomic orbital electron populations 1.22471 0.89349 1.01368 0.99986 1.64730 1.06756 1.14920 1.38642 1.23243 0.96762 0.89795 0.99761 1.22580 0.94322 0.99138 0.99276 1.20496 0.92603 0.93638 0.97476 0.90457 1.21730 1.06822 1.16317 0.96171 1.20055 0.93911 0.93727 0.93889 1.19638 1.22165 1.15524 0.90750 0.89375 1.26319 0.96009 0.96464 0.95255 1.69587 1.38222 1.37873 0.99885 0.86379 0.80652 0.81510 0.78732 1.19227 1.20730 1.17849 1.23102 0.96524 0.99983 0.88739 0.91844 0.92125 0.95923 0.94605 0.91271 0.91497 0.92213 0.91229 0.91669 0.90932 0.95209 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.40 60.06 0.56 0.82 15 2 N -0.53 -9.44 5.55 -238.72 -1.33 -10.76 15 3 C 0.03 0.54 6.56 -1.89 -0.01 0.53 15 4 C -0.12 -2.21 6.60 -24.87 -0.16 -2.37 15 5 C -0.02 -0.52 3.13 -90.42 -0.28 -0.80 15 6 H 0.08 1.89 5.39 -51.93 -0.28 1.61 15 7 C -0.39 -9.42 8.62 -35.45 -0.31 -9.73 15 8 C 0.00 0.12 8.87 -40.03 -0.36 -0.24 15 9 C -0.45 -12.44 9.21 -38.12 -0.35 -12.79 15 10 H 0.09 2.59 5.73 -52.48 -0.30 2.28 15 11 C 0.08 2.00 5.52 -17.26 -0.10 1.91 15 12 N -0.83 -22.74 13.92 55.57 0.77 -21.97 15 13 Si 0.90 20.04 27.54 -169.99 -4.68 15.36 15 14 H -0.27 -5.83 7.11 56.52 0.40 -5.42 15 15 H -0.28 -6.05 7.11 56.52 0.40 -5.64 15 16 H -0.25 -5.56 6.27 56.52 0.35 -5.21 15 17 C 0.04 0.88 6.35 -2.76 -0.02 0.87 15 18 H 0.06 0.87 8.14 -51.93 -0.42 0.44 15 19 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.02 0.32 8.00 -51.93 -0.42 -0.09 15 21 H 0.04 0.58 7.96 -51.93 -0.41 0.17 15 22 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.07 1.29 7.86 -51.93 -0.41 0.88 15 24 H 0.06 1.10 8.14 -51.93 -0.42 0.67 15 25 H 0.07 1.66 8.06 -52.49 -0.42 1.23 15 26 H 0.07 1.61 5.25 -52.49 -0.28 1.34 15 27 H 0.28 6.98 8.29 -40.82 -0.34 6.64 15 28 H 0.03 0.59 7.73 -51.93 -0.40 0.19 15 29 H 0.08 1.58 7.67 -51.93 -0.40 1.18 15 LS Contribution 236.28 15.07 3.56 3.56 Total: -1.00 -27.50 236.28 -6.88 -34.38 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.19 Total: 1.24 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -1.02 Total: -21.81 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: -0.55 Total: -32.73 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.68 Total: 15.36 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -27.50 -6.88 -34.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260440093.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.665 kcal (2) G-P(sol) polarization free energy of solvation -27.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds