Wall clock time and date at job start Mon Mar 30 2020 02:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48535 * 110.99962 * 2 1 4 4 C 1.54941 * 103.22733 * 200.27933 * 3 2 1 5 5 C 1.54597 * 102.92002 * 37.41292 * 4 3 2 6 6 H 1.09004 * 110.38790 * 97.00036 * 5 4 3 7 7 C 1.50696 * 110.30806 * 219.12581 * 5 4 3 8 8 C 1.35039 * 119.99772 * 230.59062 * 7 5 4 9 9 C 1.40065 * 120.00262 * 6.14130 * 8 7 5 10 10 H 1.08006 * 119.99746 * 5.70209 * 9 8 7 11 11 C 1.40306 * 120.00388 * 185.71155 * 9 8 7 12 12 N 1.30686 * 120.00222 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99687 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47398 * 90.00284 * 13 11 9 15 15 H 1.48500 * 109.47336 * 210.00726 * 13 11 9 16 16 H 1.48506 * 109.47306 * 330.00394 * 13 11 9 17 17 C 1.47898 * 111.00138 * 242.60307 * 2 1 3 18 18 H 1.09005 * 109.46961 * 177.39597 * 1 2 3 19 19 H 1.09004 * 109.47290 * 297.39435 * 1 2 3 20 20 H 1.09004 * 109.47326 * 57.39467 * 1 2 3 21 21 H 1.08997 * 110.66829 * 318.71362 * 3 2 1 22 22 H 1.09002 * 110.66517 * 81.68010 * 3 2 1 23 23 H 1.09003 * 110.72225 * 279.05422 * 4 3 2 24 24 H 1.08997 * 110.72183 * 155.77488 * 4 3 2 25 25 H 1.08001 * 120.00437 * 50.86316 * 7 5 4 26 26 H 1.07998 * 119.99497 * 186.14549 * 8 7 5 27 27 H 0.97005 * 119.99950 * 179.97438 * 12 11 9 28 28 H 1.09003 * 109.91836 * 26.49061 * 17 2 1 29 29 H 1.08994 * 110.08709 * 265.28843 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4491 1.2107 -0.5228 5 6 3.2982 0.1053 -1.5931 6 1 3.2141 0.5471 -2.5860 7 6 4.4716 -0.8387 -1.5391 8 6 5.1486 -1.1395 -2.6681 9 6 4.8441 -0.4780 -3.8646 10 1 4.1339 0.3356 -3.8662 11 6 5.4615 -0.8726 -5.0612 12 7 5.1771 -0.2557 -6.1776 13 14 6.6902 -2.2796 -5.0583 14 1 5.9768 -3.5604 -5.2945 15 1 7.6912 -2.0649 -6.1340 16 1 7.3797 -2.3321 -3.7440 17 6 1.9990 -0.6353 -1.2259 18 1 -0.3633 -1.0267 -0.0467 19 1 -0.3634 0.4729 0.9124 20 1 -0.3634 0.5538 -0.8657 21 1 1.4237 2.0205 -0.6729 22 1 2.0013 1.7987 1.0092 23 1 4.1115 0.8836 0.2788 24 1 3.8122 2.1352 -0.9715 25 1 4.7684 -1.2781 -0.5982 26 1 5.9248 -1.8902 -2.6485 27 1 5.6042 -0.5283 -7.0048 28 1 1.2758 -0.5403 -2.0359 29 1 2.2116 -1.6880 -1.0400 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260440093.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:39 Heat of formation + Delta-G solvation = -12.624934 kcal Electronic energy + Delta-G solvation = -10746.566430 eV Core-core repulsion = 8861.518674 eV Total energy + Delta-G solvation = -1885.047756 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.80635 -36.29786 -34.31366 -32.01643 -29.63218 -27.14899 -25.81387 -21.96565 -21.95104 -20.58774 -18.64497 -17.02129 -16.55568 -15.91908 -15.35716 -15.00870 -14.64646 -14.01780 -13.87896 -13.16139 -13.09235 -12.57797 -12.47011 -12.29478 -12.08753 -12.04561 -11.92630 -11.40386 -11.23676 -10.70931 -9.75403 -9.35587 -8.74473 -6.29807 1.22084 1.32454 1.45830 1.82041 2.16277 3.18962 3.32616 3.97016 4.08874 4.18734 4.41409 4.55831 4.57868 4.68716 4.82906 4.92743 4.96499 5.01379 5.05331 5.19320 5.32692 5.40988 5.70170 5.84941 6.02390 6.18381 6.38605 6.49685 6.97183 7.15216 8.34087 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.070551 B = 0.009520 C = 0.009393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.778105 B = 2940.550393 C = 2980.116009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.534 5.534 3 C 0.039 3.961 4 C -0.112 4.112 5 C -0.035 4.035 6 H 0.046 0.954 7 C -0.372 4.372 8 C -0.014 4.014 9 C -0.479 4.479 10 H 0.053 0.947 11 C 0.029 3.971 12 N -0.870 5.870 13 Si 0.970 3.030 14 H -0.258 1.258 15 H -0.267 1.267 16 H -0.248 1.248 17 C 0.052 3.948 18 H 0.070 0.930 19 H 0.085 0.915 20 H 0.024 0.976 21 H 0.042 0.958 22 H 0.097 0.903 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.290 0.710 28 H 0.026 0.974 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.007 -0.357 7.565 8.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.259 5.259 3 C -0.089 4.089 4 C -0.150 4.150 5 C -0.054 4.054 6 H 0.064 0.936 7 C -0.394 4.394 8 C -0.034 4.034 9 C -0.509 4.509 10 H 0.071 0.929 11 C -0.183 4.183 12 N -0.498 5.498 13 Si 0.790 3.210 14 H -0.182 1.182 15 H -0.192 1.192 16 H -0.172 1.172 17 C -0.076 4.076 18 H 0.089 0.911 19 H 0.104 0.896 20 H 0.042 0.958 21 H 0.060 0.940 22 H 0.115 0.885 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.045 0.955 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.856 -0.582 7.737 8.664 hybrid contribution 0.094 0.070 -1.252 1.258 sum -3.762 -0.512 6.485 7.515 Atomic orbital electron populations 1.22572 0.87059 1.02331 1.01324 1.64733 1.08970 1.15351 1.36798 1.23261 0.94759 0.89529 1.01348 1.22515 0.96396 0.97959 0.98178 1.20514 0.93165 0.94614 0.97111 0.93613 1.22105 1.06285 1.15029 0.95991 1.20159 0.95006 0.94597 0.93663 1.19640 1.22940 1.15820 0.92500 0.92901 1.27170 0.97720 0.99046 0.94365 1.69646 1.39735 1.39675 1.00738 0.85365 0.78261 0.78026 0.79335 1.18227 1.19218 1.17155 1.22860 0.95423 0.99378 0.89910 0.91091 0.89617 0.95766 0.93963 0.88491 0.91413 0.92030 0.90286 0.90315 0.90028 0.95522 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.40 127.69 1.20 1.61 15 2 N -0.53 -17.91 5.55 -909.16 -5.05 -22.96 15 3 C 0.04 1.20 6.56 86.65 0.57 1.77 15 4 C -0.11 -4.19 6.60 31.80 0.21 -3.98 15 5 C -0.04 -1.57 3.13 -10.66 -0.03 -1.60 15 6 H 0.05 2.34 5.39 -2.38 -0.01 2.33 15 7 C -0.37 -17.97 8.62 24.95 0.21 -17.75 15 8 C -0.01 -0.74 8.87 21.98 0.19 -0.54 15 9 C -0.48 -27.25 9.21 23.22 0.21 -27.04 15 10 H 0.05 3.30 5.73 -2.91 -0.02 3.28 15 11 C 0.03 1.54 5.52 85.37 0.47 2.01 15 12 N -0.87 -48.80 13.92 21.89 0.30 -48.50 15 13 Si 0.97 40.78 27.54 68.60 1.89 42.67 15 14 H -0.26 -10.40 7.11 99.48 0.71 -9.69 15 15 H -0.27 -10.55 7.11 99.48 0.71 -9.84 15 16 H -0.25 -10.05 6.27 99.48 0.62 -9.43 15 17 C 0.05 2.07 6.35 86.45 0.55 2.62 15 18 H 0.07 1.76 8.14 -2.38 -0.02 1.74 15 19 H 0.09 1.85 8.14 -2.39 -0.02 1.83 15 20 H 0.02 0.63 8.00 -2.39 -0.02 0.61 15 21 H 0.04 1.27 7.96 -2.39 -0.02 1.25 15 22 H 0.10 2.54 8.14 -2.39 -0.02 2.52 15 23 H 0.07 2.50 7.86 -2.39 -0.02 2.48 15 24 H 0.06 2.23 8.14 -2.39 -0.02 2.21 15 25 H 0.08 3.65 8.06 -2.91 -0.02 3.63 15 26 H 0.08 3.80 5.25 -2.91 -0.02 3.79 15 27 H 0.29 14.59 8.29 -92.70 -0.77 13.82 15 28 H 0.03 1.05 7.73 -2.39 -0.02 1.03 15 29 H 0.07 2.75 7.67 -2.39 -0.02 2.73 15 Total: -1.00 -59.18 236.28 1.76 -57.42 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 1.03 Total: 14.27 kcal Atomic # 6 Polarization: -46.49 SS G_CDS: 3.59 Total: -42.90 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -4.74 Total: -71.46 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 1.89 Total: 42.67 kcal Total: -59.18 1.76 -57.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260440093.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.790 kcal (2) G-P(sol) polarization free energy of solvation -59.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds