Wall clock time and date at job start Mon Mar 30 2020 02:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34532 * 122.32925 * 2 1 4 4 S 1.75798 * 110.14519 * 179.97438 * 3 2 1 5 5 C 1.75892 * 91.12844 * 0.02562 * 4 3 2 6 6 C 1.39912 * 125.41007 * 180.02562 * 5 4 3 7 7 H 1.07999 * 120.00131 * 173.19845 * 6 5 4 8 8 C 1.40072 * 119.99593 * 353.19425 * 6 5 4 9 9 N 1.30871 * 120.00150 * 6.49286 * 8 6 5 10 10 Si 1.86802 * 119.99943 * 186.49037 * 8 6 5 11 11 H 1.48499 * 109.47245 * 94.98567 * 10 8 6 12 12 H 1.48501 * 109.47228 * 214.99266 * 10 8 6 13 13 H 1.48506 * 109.46704 * 334.98944 * 10 8 6 14 14 C 1.36801 * 122.32685 * 179.97438 * 2 1 3 15 15 C 1.50697 * 122.90213 * 0.02562 * 14 2 1 16 16 H 1.08997 * 109.47251 * 270.02882 * 1 2 3 17 17 H 1.09004 * 109.47188 * 30.02557 * 1 2 3 18 18 H 1.08999 * 109.47068 * 150.02077 * 1 2 3 19 19 H 1.08003 * 124.93045 * 359.97438 * 3 2 1 20 20 H 0.96999 * 120.00175 * 179.97438 * 9 8 6 21 21 H 1.09000 * 109.47214 * 269.99935 * 15 14 2 22 22 H 1.08999 * 109.47382 * 29.99933 * 15 14 2 23 23 H 1.09006 * 109.47479 * 149.99763 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2264 1.1368 0.0000 4 16 3.9448 0.7658 0.0007 5 6 3.6075 -0.9605 0.0002 6 6 4.5712 -1.9748 0.0010 7 1 4.2698 -3.0060 0.1114 8 6 5.9270 -1.6528 -0.1415 9 7 6.3048 -0.3998 -0.1476 10 14 7.1957 -3.0118 -0.3227 11 1 7.4651 -3.2486 -1.7637 12 1 8.4533 -2.6087 0.3564 13 1 6.6772 -4.2586 0.2953 14 6 2.2385 -1.1560 0.0005 15 6 1.6071 -2.5243 0.0006 16 1 -0.3633 0.0005 1.0276 17 1 -0.3634 0.8898 -0.5142 18 1 -0.3633 -0.8902 -0.5135 19 1 1.8090 2.1329 -0.0004 20 1 7.2437 -0.1768 -0.2459 21 1 1.4545 -2.8540 1.0282 22 1 0.6470 -2.4815 -0.5136 23 1 2.2631 -3.2273 -0.5129 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260488531.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:40 Heat of formation + Delta-G solvation = -22.097541 kcal Electronic energy + Delta-G solvation = -8852.499578 eV Core-core repulsion = 7176.242173 eV Total energy + Delta-G solvation = -1676.257405 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 182.046 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.63726 -35.87941 -32.12554 -29.88065 -28.40267 -25.35969 -22.40975 -19.54948 -18.46266 -16.99320 -16.52665 -15.25418 -14.80620 -14.11690 -13.95564 -13.76643 -13.45766 -13.15137 -12.86443 -12.34915 -12.17063 -12.11993 -11.82941 -11.49740 -11.17344 -10.77706 -9.22748 -8.77572 -8.47444 -6.38854 0.83103 1.37218 1.51789 1.54182 1.78685 2.10074 2.25934 2.31457 3.11786 4.57006 4.66149 4.85403 4.90376 5.00033 5.02905 5.11565 5.15060 5.26195 5.50214 5.81011 5.99751 6.26517 6.35950 6.73271 6.78552 8.10405 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.061517 B = 0.015550 C = 0.012539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.045945 B = 1800.259257 C = 2232.448775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.050 4.050 3 C -0.430 4.430 4 S 0.074 5.926 5 C 0.011 3.989 6 C -0.419 4.419 7 H 0.099 0.901 8 C 0.012 3.988 9 N -0.811 5.811 10 Si 1.008 2.992 11 H -0.260 1.260 12 H -0.263 1.263 13 H -0.253 1.253 14 C -0.354 4.354 15 C -0.041 4.041 16 H 0.065 0.935 17 H 0.061 0.939 18 H 0.067 0.933 19 H 0.130 0.870 20 H 0.304 0.696 21 H 0.036 0.964 22 H 0.057 0.943 23 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 -2.974 -0.330 3.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.061 4.061 3 C -0.564 4.564 4 S 0.335 5.665 5 C -0.109 4.109 6 C -0.454 4.454 7 H 0.117 0.883 8 C -0.205 4.205 9 N -0.438 5.438 10 Si 0.827 3.173 11 H -0.185 1.185 12 H -0.187 1.187 13 H -0.176 1.176 14 C -0.361 4.361 15 C -0.100 4.100 16 H 0.084 0.916 17 H 0.080 0.920 18 H 0.086 0.914 19 H 0.148 0.852 20 H 0.116 0.884 21 H 0.055 0.945 22 H 0.075 0.925 23 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.406 -1.866 -0.337 1.939 hybrid contribution -0.679 -0.823 -0.047 1.069 sum -0.273 -2.689 -0.384 2.730 Atomic orbital electron populations 1.20477 0.90250 1.01889 1.01578 1.18532 0.96734 0.91921 0.98887 1.25389 0.99875 1.00221 1.30937 1.84286 1.02405 1.02720 1.77055 1.22115 0.95915 0.95510 0.97388 1.19488 0.90935 0.94995 1.39994 0.88285 1.27209 1.01832 0.99591 0.91909 1.69015 1.20652 1.20323 1.33803 0.84758 0.75753 0.77156 0.79630 1.18495 1.18727 1.17581 1.18875 0.91652 0.96116 1.29438 1.19852 0.98421 0.92461 0.99250 0.91618 0.92047 0.91411 0.85236 0.88354 0.94508 0.92452 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.10 9.81 71.24 0.70 -2.40 14 2 C -0.05 -2.42 5.78 -21.05 -0.12 -2.54 14 3 C -0.43 -21.80 10.98 66.97 0.74 -21.07 14 4 S 0.07 4.00 20.30 -56.49 -1.15 2.86 14 5 C 0.01 0.59 6.18 22.69 0.14 0.73 14 6 C -0.42 -22.15 8.82 23.12 0.20 -21.94 14 7 H 0.10 4.95 6.92 -2.91 -0.02 4.93 14 8 C 0.01 0.58 5.49 85.28 0.47 1.04 14 9 N -0.81 -40.93 10.70 21.86 0.23 -40.70 14 10 Si 1.01 36.23 29.57 68.60 2.03 38.26 14 11 H -0.26 -9.06 7.11 99.48 0.71 -8.35 14 12 H -0.26 -8.93 7.11 99.48 0.71 -8.22 14 13 H -0.25 -8.75 7.11 99.48 0.71 -8.04 14 14 C -0.35 -18.23 5.91 -20.19 -0.12 -18.35 14 15 C -0.04 -1.76 9.49 71.24 0.68 -1.08 14 16 H 0.07 2.25 8.14 -2.39 -0.02 2.23 14 17 H 0.06 2.07 8.12 -2.39 -0.02 2.05 14 18 H 0.07 2.31 6.45 -2.39 -0.02 2.29 14 19 H 0.13 6.01 8.06 -2.91 -0.02 5.99 14 20 H 0.30 13.66 8.30 -92.71 -0.77 12.89 14 21 H 0.04 1.49 8.14 -2.39 -0.02 1.47 14 22 H 0.06 2.14 6.46 -2.39 -0.02 2.13 14 23 H 0.04 1.73 7.11 -2.38 -0.02 1.71 14 Total: -1.00 -59.12 212.05 5.00 -54.12 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.20 Total: 11.08 kcal Atomic # 6 Polarization: -68.30 SS G_CDS: 2.68 Total: -65.61 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.23 Total: -40.70 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.15 Total: 2.86 kcal Total: -59.12 5.00 -54.12 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260488531.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.025 kcal (2) G-P(sol) polarization free energy of solvation -59.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds