Wall clock time and date at job start Mon Mar 30 2020 02:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47903 * 111.00144 * 2 1 4 4 C 1.53993 * 107.05802 * 214.15027 * 3 2 1 5 5 C 1.54593 * 105.14097 * 1.22949 * 4 3 2 6 6 C 1.48530 * 111.00044 * 242.60060 * 2 1 3 7 7 H 1.09000 * 110.66794 * 41.29477 * 6 2 1 8 8 C 1.50696 * 110.66992 * 278.15663 * 6 2 1 9 9 C 1.35033 * 120.00048 * 113.85673 * 8 6 2 10 10 C 1.40076 * 119.99897 * 1.38975 * 9 8 6 11 11 H 1.08000 * 119.99523 * 352.89007 * 10 9 8 12 12 C 1.40302 * 119.99957 * 172.89642 * 10 9 8 13 13 N 1.30697 * 119.99985 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00461 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47391 * 89.99828 * 14 12 10 16 16 H 1.48491 * 109.47384 * 210.00144 * 14 12 10 17 17 H 1.48507 * 109.46867 * 330.00145 * 14 12 10 18 18 H 1.09007 * 109.46631 * 56.47466 * 1 2 3 19 19 H 1.08994 * 109.47026 * 176.46954 * 1 2 3 20 20 H 1.08997 * 109.47266 * 296.48020 * 1 2 3 21 21 H 1.08996 * 109.91842 * 333.50841 * 3 2 1 22 22 H 1.09005 * 109.91585 * 94.60051 * 3 2 1 23 23 H 1.09006 * 110.30430 * 120.14267 * 4 3 2 24 24 H 1.08995 * 110.31335 * 242.30837 * 4 3 2 25 25 H 1.09000 * 110.72975 * 140.31427 * 5 4 3 26 26 H 1.09009 * 110.72375 * 263.42034 * 5 4 3 27 27 H 1.08004 * 120.00303 * 293.86016 * 8 6 2 28 28 H 1.07998 * 120.00165 * 181.38204 * 9 8 6 29 29 H 0.96997 * 120.00051 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2984 1.3659 -0.8264 5 6 3.4493 -0.0930 -1.3153 6 6 2.0013 -0.6381 -1.2311 7 1 1.4239 -0.3322 -2.1035 8 6 2.0052 -2.1388 -1.0933 9 6 1.1993 -2.8905 -1.8736 10 6 0.3811 -2.2775 -2.8311 11 1 0.3077 -1.2006 -2.8688 12 6 -0.3431 -3.0624 -3.7410 13 7 -1.1069 -2.4904 -4.6341 14 14 -0.2157 -4.9249 -3.6762 15 1 -1.2588 -5.4610 -2.7652 16 1 -0.4139 -5.4824 -5.0381 17 1 1.1270 -5.3119 -3.1734 18 1 -0.3633 0.5676 -0.8568 19 1 -0.3633 -1.0257 -0.0633 20 1 -0.3634 0.4582 0.9198 21 1 1.2760 2.0561 -0.4571 22 1 2.2089 1.6980 1.0216 23 1 3.2138 2.0429 -1.6765 24 1 4.1471 1.6454 -0.2023 25 1 3.8125 -0.1200 -2.3427 26 1 4.1141 -0.6533 -0.6578 27 1 2.6525 -2.6131 -0.3705 28 1 1.1856 -3.9643 -1.7595 29 1 -1.6073 -3.0330 -5.2634 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260521427.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:28 Heat of formation + Delta-G solvation = 5.824965 kcal Electronic energy + Delta-G solvation = -10955.970862 eV Core-core repulsion = 9071.723153 eV Total energy + Delta-G solvation = -1884.247709 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.16953 -34.10308 -31.77737 -31.34491 -27.89063 -25.01667 -24.26143 -20.42214 -20.13280 -18.59308 -16.74559 -15.33196 -14.80654 -13.90211 -13.82035 -13.27441 -12.77285 -12.62107 -12.07049 -11.61289 -11.32179 -10.89867 -10.73947 -10.65126 -10.41834 -10.17213 -10.04844 -9.72540 -9.43744 -9.03576 -7.85723 -7.43404 -6.75481 -4.24104 2.98140 3.12203 3.17875 3.70597 3.99457 4.94912 5.30194 5.41898 5.55876 5.62156 6.04500 6.08136 6.21168 6.25468 6.28419 6.54397 6.57950 6.67772 6.78326 6.82713 6.95712 7.19440 7.51822 7.70578 7.93474 8.00118 8.47589 8.54218 8.99817 9.16953 10.28062 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.059892 B = 0.011386 C = 0.010983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.395983 B = 2458.598818 C = 2548.698911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.521 5.521 3 C 0.033 3.967 4 C -0.132 4.132 5 C -0.116 4.116 6 C 0.137 3.863 7 H 0.058 0.942 8 C -0.375 4.375 9 C 0.010 3.990 10 C -0.452 4.452 11 H 0.087 0.913 12 C 0.076 3.924 13 N -0.828 5.828 14 Si 0.901 3.099 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.254 1.254 18 H 0.018 0.982 19 H 0.075 0.925 20 H 0.048 0.952 21 H 0.032 0.968 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 2.824 3.943 5.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.246 5.246 3 C -0.096 4.096 4 C -0.170 4.170 5 C -0.154 4.154 6 C 0.032 3.968 7 H 0.076 0.924 8 C -0.398 4.398 9 C -0.012 4.012 10 C -0.482 4.482 11 H 0.105 0.895 12 C -0.140 4.140 13 N -0.455 5.455 14 Si 0.726 3.274 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.178 1.178 18 H 0.037 0.963 19 H 0.094 0.906 20 H 0.066 0.934 21 H 0.051 0.949 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.359 2.562 4.180 5.942 hybrid contribution -0.439 -0.341 -0.777 0.955 sum 2.920 2.221 3.403 5.004 Atomic orbital electron populations 1.22321 0.88672 1.02535 0.98526 1.64911 1.07554 1.11953 1.40133 1.22805 0.95792 0.91811 0.99159 1.22393 0.97334 0.98318 0.98974 1.22493 0.98965 0.93824 1.00119 1.21295 0.91925 0.94098 0.89489 0.92381 1.21574 1.13808 0.91532 1.12848 1.20011 0.92604 0.95205 0.93358 1.19607 1.21000 0.96474 1.11081 0.89549 1.26312 0.92678 1.01206 0.93790 1.69588 1.22211 1.38633 1.15018 0.86389 0.80269 0.82717 0.77989 1.19224 1.20680 1.17835 0.96296 0.90577 0.93358 0.94944 0.91799 0.92392 0.92141 0.92060 0.91781 0.91073 0.91704 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.34 60.07 0.56 1.13 15 2 N -0.52 -10.88 5.23 -232.21 -1.21 -12.09 15 3 C 0.03 0.58 6.70 -2.75 -0.02 0.56 15 4 C -0.13 -2.17 6.93 -25.38 -0.18 -2.35 15 5 C -0.12 -2.23 6.48 -24.87 -0.16 -2.39 15 6 C 0.14 3.11 2.40 -66.94 -0.16 2.95 15 7 H 0.06 1.47 5.35 -51.93 -0.28 1.19 15 8 C -0.37 -9.20 9.06 -35.45 -0.32 -9.52 15 9 C 0.01 0.25 8.86 -40.03 -0.35 -0.11 15 10 C -0.45 -12.37 9.19 -38.12 -0.35 -12.72 15 11 H 0.09 2.54 5.77 -52.49 -0.30 2.23 15 12 C 0.08 2.01 5.52 -17.26 -0.10 1.92 15 13 N -0.83 -22.61 13.92 55.57 0.77 -21.84 15 14 Si 0.90 19.97 27.38 -169.99 -4.65 15.31 15 15 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 16 H -0.28 -6.03 7.11 56.52 0.40 -5.62 15 17 H -0.25 -5.58 6.50 56.52 0.37 -5.21 15 18 H 0.02 0.38 7.98 -51.93 -0.41 -0.03 15 19 H 0.08 1.67 7.94 -51.93 -0.41 1.26 15 20 H 0.05 0.84 8.14 -51.93 -0.42 0.41 15 21 H 0.03 0.55 7.68 -51.93 -0.40 0.15 15 22 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 26 H 0.06 1.22 8.05 -51.92 -0.42 0.80 15 27 H 0.07 1.72 8.06 -52.48 -0.42 1.30 15 28 H 0.07 1.60 5.39 -52.49 -0.28 1.31 15 29 H 0.28 6.96 8.29 -40.82 -0.34 6.62 15 LS Contribution 236.95 15.07 3.57 3.57 Total: -1.00 -27.51 236.95 -6.81 -34.32 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.21 Total: 1.26 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -1.08 Total: -20.53 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: -0.44 Total: -33.93 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.65 Total: 15.31 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -27.51 -6.81 -34.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260521427.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.147 kcal (2) G-P(sol) polarization free energy of solvation -27.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds