Wall clock time and date at job start Mon Mar 30 2020 02:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47903 * 111.00144 * 2 1 4 4 C 1.53993 * 107.05802 * 214.15027 * 3 2 1 5 5 C 1.54593 * 105.14097 * 1.22949 * 4 3 2 6 6 C 1.48530 * 111.00044 * 242.60060 * 2 1 3 7 7 H 1.09000 * 110.66794 * 41.29477 * 6 2 1 8 8 C 1.50696 * 110.66992 * 278.15663 * 6 2 1 9 9 C 1.35033 * 120.00048 * 113.85673 * 8 6 2 10 10 C 1.40076 * 119.99897 * 1.38975 * 9 8 6 11 11 H 1.08000 * 119.99523 * 352.89007 * 10 9 8 12 12 C 1.40302 * 119.99957 * 172.89642 * 10 9 8 13 13 N 1.30697 * 119.99985 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00461 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47391 * 89.99828 * 14 12 10 16 16 H 1.48491 * 109.47384 * 210.00144 * 14 12 10 17 17 H 1.48507 * 109.46867 * 330.00145 * 14 12 10 18 18 H 1.09007 * 109.46631 * 56.47466 * 1 2 3 19 19 H 1.08994 * 109.47026 * 176.46954 * 1 2 3 20 20 H 1.08997 * 109.47266 * 296.48020 * 1 2 3 21 21 H 1.08996 * 109.91842 * 333.50841 * 3 2 1 22 22 H 1.09005 * 109.91585 * 94.60051 * 3 2 1 23 23 H 1.09006 * 110.30430 * 120.14267 * 4 3 2 24 24 H 1.08995 * 110.31335 * 242.30837 * 4 3 2 25 25 H 1.09000 * 110.72975 * 140.31427 * 5 4 3 26 26 H 1.09009 * 110.72375 * 263.42034 * 5 4 3 27 27 H 1.08004 * 120.00303 * 293.86016 * 8 6 2 28 28 H 1.07998 * 120.00165 * 181.38204 * 9 8 6 29 29 H 0.96997 * 120.00051 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2984 1.3659 -0.8264 5 6 3.4493 -0.0930 -1.3153 6 6 2.0013 -0.6381 -1.2311 7 1 1.4239 -0.3322 -2.1035 8 6 2.0052 -2.1388 -1.0933 9 6 1.1993 -2.8905 -1.8736 10 6 0.3811 -2.2775 -2.8311 11 1 0.3077 -1.2006 -2.8688 12 6 -0.3431 -3.0624 -3.7410 13 7 -1.1069 -2.4904 -4.6341 14 14 -0.2157 -4.9249 -3.6762 15 1 -1.2588 -5.4610 -2.7652 16 1 -0.4139 -5.4824 -5.0381 17 1 1.1270 -5.3119 -3.1734 18 1 -0.3633 0.5676 -0.8568 19 1 -0.3633 -1.0257 -0.0633 20 1 -0.3634 0.4582 0.9198 21 1 1.2760 2.0561 -0.4571 22 1 2.2089 1.6980 1.0216 23 1 3.2138 2.0429 -1.6765 24 1 4.1471 1.6454 -0.2023 25 1 3.8125 -0.1200 -2.3427 26 1 4.1141 -0.6533 -0.6578 27 1 2.6525 -2.6131 -0.3705 28 1 1.1856 -3.9643 -1.7595 29 1 -1.6073 -3.0330 -5.2634 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260521427.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:28 Heat of formation + Delta-G solvation = -12.042890 kcal Electronic energy + Delta-G solvation = -10956.745670 eV Core-core repulsion = 9071.723153 eV Total energy + Delta-G solvation = -1885.022517 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.78694 -36.07505 -33.73381 -32.88910 -29.61406 -26.75388 -26.06962 -22.18168 -21.57544 -20.59933 -18.64216 -16.99918 -16.54282 -15.64219 -15.50759 -14.94956 -14.54165 -14.32956 -13.78648 -13.19802 -13.09851 -12.50902 -12.42910 -12.26431 -12.09242 -11.92383 -11.71387 -11.48800 -11.24577 -10.92837 -9.84764 -9.15733 -8.74128 -6.31868 1.20007 1.31865 1.45868 1.79770 2.15638 3.20519 3.52241 3.96314 4.01967 4.19126 4.42920 4.54283 4.63122 4.75578 4.80466 4.89088 5.03769 5.06076 5.09078 5.18481 5.27369 5.40181 5.64214 5.77280 6.17858 6.30893 6.38510 6.51022 6.95635 7.14410 8.32921 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.059892 B = 0.011386 C = 0.010983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.395983 B = 2458.598818 C = 2548.698911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.530 5.530 3 C 0.029 3.971 4 C -0.124 4.124 5 C -0.114 4.114 6 C 0.129 3.871 7 H 0.023 0.977 8 C -0.363 4.363 9 C -0.007 4.007 10 C -0.475 4.475 11 H 0.050 0.950 12 C 0.030 3.970 13 N -0.869 5.869 14 Si 0.968 3.032 15 H -0.257 1.257 16 H -0.267 1.267 17 H -0.249 1.249 18 H 0.005 0.995 19 H 0.049 0.951 20 H 0.080 0.920 21 H 0.035 0.965 22 H 0.089 0.911 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.492 2.566 5.058 7.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.254 5.254 3 C -0.099 4.099 4 C -0.162 4.162 5 C -0.153 4.153 6 C 0.023 3.977 7 H 0.041 0.959 8 C -0.386 4.386 9 C -0.028 4.028 10 C -0.505 4.505 11 H 0.068 0.932 12 C -0.182 4.182 13 N -0.497 5.497 14 Si 0.789 3.211 15 H -0.181 1.181 16 H -0.192 1.192 17 H -0.173 1.173 18 H 0.024 0.976 19 H 0.068 0.932 20 H 0.098 0.902 21 H 0.053 0.947 22 H 0.107 0.893 23 H 0.086 0.914 24 H 0.109 0.891 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.451 2.324 5.305 7.305 hybrid contribution -0.737 -0.144 -1.046 1.288 sum 3.714 2.180 4.259 6.057 Atomic orbital electron populations 1.22261 0.88729 1.00961 0.99544 1.64848 1.07638 1.14333 1.38563 1.22960 0.96242 0.89727 1.00976 1.22392 0.97810 0.96333 0.99649 1.22451 0.96375 0.95860 1.00570 1.21243 0.93997 0.93366 0.89110 0.95932 1.21937 1.12274 0.92902 1.11460 1.20109 0.93025 0.96017 0.93658 1.19563 1.22972 0.95061 1.12927 0.93198 1.27157 0.91892 1.06212 0.92939 1.69647 1.23301 1.40711 1.16013 0.85383 0.80577 0.76322 0.78850 1.18101 1.19188 1.17311 0.97619 0.93237 0.90152 0.94657 0.89294 0.91376 0.89103 0.92064 0.91203 0.90325 0.90382 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.37 9.34 127.69 1.19 2.56 15 2 N -0.53 -21.54 5.23 -888.57 -4.65 -26.19 15 3 C 0.03 0.94 6.70 86.45 0.58 1.52 15 4 C -0.12 -3.71 6.93 31.47 0.22 -3.49 15 5 C -0.11 -4.22 6.48 31.80 0.21 -4.01 15 6 C 0.13 5.86 2.40 44.52 0.11 5.97 15 7 H 0.02 1.20 5.35 -2.39 -0.01 1.19 15 8 C -0.36 -17.78 9.06 24.95 0.23 -17.55 15 9 C -0.01 -0.37 8.86 21.98 0.19 -0.17 15 10 C -0.47 -26.92 9.19 23.22 0.21 -26.71 15 11 H 0.05 3.12 5.77 -2.91 -0.02 3.11 15 12 C 0.03 1.60 5.52 85.36 0.47 2.07 15 13 N -0.87 -48.64 13.92 21.89 0.30 -48.34 15 14 Si 0.97 40.74 27.38 68.60 1.88 42.62 15 15 H -0.26 -10.31 7.11 99.48 0.71 -9.60 15 16 H -0.27 -10.56 7.11 99.48 0.71 -9.85 15 17 H -0.25 -10.20 6.50 99.48 0.65 -9.55 15 18 H 0.01 0.22 7.98 -2.38 -0.02 0.20 15 19 H 0.05 2.22 7.94 -2.39 -0.02 2.20 15 20 H 0.08 2.67 8.14 -2.39 -0.02 2.65 15 21 H 0.04 1.13 7.68 -2.39 -0.02 1.11 15 22 H 0.09 2.48 8.14 -2.38 -0.02 2.47 15 23 H 0.07 1.91 8.14 -2.38 -0.02 1.89 15 24 H 0.09 2.21 8.14 -2.39 -0.02 2.19 15 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 15 26 H 0.07 2.49 8.05 -2.38 -0.02 2.47 15 27 H 0.08 3.70 8.06 -2.91 -0.02 3.68 15 28 H 0.08 3.77 5.39 -2.91 -0.02 3.76 15 29 H 0.29 14.58 8.29 -92.71 -0.77 13.81 15 Total: -1.00 -59.80 236.95 1.99 -57.81 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 1.05 Total: 13.92 kcal Atomic # 6 Polarization: -43.23 SS G_CDS: 3.41 Total: -39.82 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -4.34 Total: -74.53 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.88 Total: 42.62 kcal Total: -59.80 1.99 -57.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260521427.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.766 kcal (2) G-P(sol) polarization free energy of solvation -59.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds