Wall clock time and date at job start Mon Mar 30 2020 01:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35035 * 1 3 3 C 1.40070 * 120.00229 * 2 1 4 4 H 1.08001 * 120.00113 * 153.10994 * 3 2 1 5 5 C 1.40313 * 120.00084 * 333.11526 * 3 2 1 6 6 N 1.30694 * 119.99856 * 162.06913 * 5 3 2 7 7 Si 1.86796 * 119.99791 * 342.07543 * 5 3 2 8 8 H 1.48499 * 109.47293 * 89.58596 * 7 5 3 9 9 H 1.48504 * 109.46800 * 209.58105 * 7 5 3 10 10 H 1.48500 * 109.47338 * 329.58454 * 7 5 3 11 11 C 1.50704 * 119.99650 * 180.02562 * 2 1 3 12 12 H 1.08989 * 109.45579 * 355.01995 * 11 2 1 13 13 C 1.53040 * 109.46460 * 114.99672 * 11 2 1 14 14 C 1.53117 * 109.27896 * 179.19043 * 13 11 2 15 15 C 1.53116 * 109.15987 * 302.34653 * 14 13 11 16 16 C 1.53033 * 109.28267 * 57.65420 * 15 14 13 17 17 N 1.46847 * 109.52288 * 300.82070 * 16 15 14 18 18 H 1.08004 * 119.99904 * 354.14699 * 1 2 3 19 19 H 1.07993 * 120.00137 * 174.14709 * 1 2 3 20 20 H 0.96995 * 119.99364 * 179.97438 * 6 5 3 21 21 H 1.08994 * 109.50474 * 299.13566 * 13 11 2 22 22 H 1.09004 * 109.50153 * 59.24944 * 13 11 2 23 23 H 1.08997 * 109.51868 * 62.25170 * 14 13 11 24 24 H 1.09004 * 109.52088 * 182.44020 * 14 13 11 25 25 H 1.09006 * 109.50403 * 297.71083 * 15 14 13 26 26 H 1.09006 * 109.50005 * 177.59602 * 15 14 13 27 27 H 1.08995 * 109.46566 * 180.80534 * 16 15 14 28 28 H 1.09009 * 109.46205 * 60.83356 * 16 15 14 29 29 H 1.00895 * 111.00293 * 185.83443 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3504 0.0000 0.0000 3 6 2.0508 1.2130 0.0000 4 1 3.0432 1.2636 0.4230 5 6 1.4630 2.3625 -0.5495 6 7 1.9350 3.5441 -0.2511 7 14 0.0057 2.2039 -1.7073 8 1 -1.2547 2.2260 -0.9225 9 1 0.0109 3.3368 -2.6674 10 1 0.1026 0.9231 -2.4524 11 6 2.1038 -1.3052 -0.0006 12 1 1.3986 -2.1315 0.0883 13 6 2.8868 -1.4414 -1.3084 14 6 3.6665 -2.7592 -1.2959 15 6 4.5937 -2.7829 -0.0777 16 6 3.7613 -2.6078 1.1945 17 7 3.0354 -1.3328 1.1343 18 1 -0.5400 0.9305 0.0954 19 1 -0.5400 -0.9304 -0.0954 20 1 1.5289 4.3387 -0.6313 21 1 2.1938 -1.4365 -2.1497 22 1 3.5825 -0.6078 -1.4045 23 1 2.9687 -3.5946 -1.2390 24 1 4.2596 -2.8401 -2.2069 25 1 5.3164 -1.9704 -0.1545 26 1 5.1202 -3.7366 -0.0397 27 1 4.4202 -2.6100 2.0628 28 1 3.0483 -3.4281 1.2777 29 1 2.5539 -1.1495 2.0018 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260526996.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:15 Heat of formation + Delta-G solvation = -19.958576 kcal Electronic energy + Delta-G solvation = -11156.878780 eV Core-core repulsion = 9271.513013 eV Total energy + Delta-G solvation = -1885.365767 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.72282 -36.35526 -33.98720 -32.77392 -30.53709 -26.94486 -24.62460 -23.97744 -21.14809 -20.50621 -18.07032 -17.37438 -16.52303 -15.69984 -15.32620 -14.82963 -14.46622 -14.38008 -14.05450 -13.90186 -13.33567 -12.75715 -12.60999 -12.08345 -11.72847 -11.67913 -11.59695 -11.35608 -11.17545 -10.81323 -9.57860 -9.16422 -8.77174 -6.42025 1.24161 1.35227 1.47211 1.73268 2.24490 3.12572 3.51096 4.02481 4.06400 4.19574 4.38482 4.53602 4.56739 4.70438 4.87849 4.94735 5.07231 5.14180 5.22734 5.29163 5.35780 5.39944 5.57816 5.77876 6.10346 6.33653 6.54358 6.70642 6.94632 7.11707 8.29858 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.058433 B = 0.013394 C = 0.012929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.067953 B = 2089.965897 C = 2165.091866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 C 0.046 3.954 3 C -0.452 4.452 4 H 0.060 0.940 5 C 0.041 3.959 6 N -0.859 5.859 7 Si 0.982 3.018 8 H -0.282 1.282 9 H -0.294 1.294 10 H -0.254 1.254 11 C 0.134 3.866 12 H 0.027 0.973 13 C -0.104 4.104 14 C -0.115 4.115 15 C -0.114 4.114 16 C 0.055 3.945 17 N -0.690 5.690 18 H 0.063 0.937 19 H 0.073 0.927 20 H 0.287 0.713 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.031 0.969 29 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.628 -10.995 -1.549 11.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.492 4.492 2 C 0.043 3.957 3 C -0.482 4.482 4 H 0.078 0.922 5 C -0.171 4.171 6 N -0.487 5.487 7 Si 0.809 3.191 8 H -0.209 1.209 9 H -0.222 1.222 10 H -0.178 1.178 11 C 0.025 3.975 12 H 0.044 0.956 13 C -0.142 4.142 14 C -0.152 4.152 15 C -0.151 4.151 16 C -0.073 4.073 17 N -0.321 5.321 18 H 0.081 0.919 19 H 0.092 0.908 20 H 0.097 0.903 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.217 -10.425 -1.889 11.072 hybrid contribution -1.410 0.055 0.064 1.413 sum 1.807 -10.369 -1.825 10.683 Atomic orbital electron populations 1.23218 0.94879 0.98154 1.32960 1.18917 0.92575 0.93304 0.90897 1.19196 1.02434 0.92354 1.34180 0.92214 1.26987 0.98773 0.94228 0.97161 1.69703 1.40849 0.99650 1.38465 0.85184 0.78093 0.77599 0.78197 1.20880 1.22228 1.17762 1.20422 0.91448 0.93525 0.92099 0.95557 1.21519 0.98626 0.98530 0.95565 1.21590 0.98448 0.96088 0.99097 1.21589 0.97673 1.02199 0.93672 1.22040 0.96826 0.89220 0.99249 1.60200 1.31867 1.34158 1.05894 0.91852 0.90849 0.90262 0.92835 0.93003 0.91646 0.90547 0.92589 0.89120 0.89784 0.95103 0.84268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -23.12 11.39 67.08 0.76 -22.35 15 2 C 0.05 2.34 4.31 -20.16 -0.09 2.25 15 3 C -0.45 -25.88 8.89 23.22 0.21 -25.67 15 4 H 0.06 3.71 7.97 -2.91 -0.02 3.69 15 5 C 0.04 2.36 5.39 85.37 0.46 2.82 15 6 N -0.86 -49.99 13.92 21.89 0.30 -49.69 15 7 Si 0.98 47.77 24.53 68.60 1.68 49.45 15 8 H -0.28 -13.72 6.50 99.48 0.65 -13.07 15 9 H -0.29 -13.44 7.11 99.48 0.71 -12.73 15 10 H -0.25 -12.22 7.00 99.48 0.70 -11.53 15 11 C 0.13 5.67 2.63 44.19 0.12 5.79 15 12 H 0.03 1.08 7.85 -2.39 -0.02 1.06 15 13 C -0.10 -4.02 5.25 30.65 0.16 -3.86 15 14 C -0.11 -3.28 6.00 30.67 0.18 -3.10 15 15 C -0.11 -3.03 6.09 30.64 0.19 -2.84 15 16 C 0.06 1.61 6.55 86.32 0.57 2.17 15 17 N -0.69 -26.52 6.21 -495.55 -3.08 -29.60 15 18 H 0.06 3.43 4.50 -2.91 -0.01 3.41 15 19 H 0.07 3.46 7.92 -2.91 -0.02 3.44 15 20 H 0.29 15.22 8.29 -92.71 -0.77 14.46 15 21 H 0.05 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.05 2.25 7.83 -2.38 -0.02 2.23 15 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 15 24 H 0.08 1.90 8.14 -2.38 -0.02 1.88 15 25 H 0.06 1.65 8.14 -2.38 -0.02 1.64 15 26 H 0.09 1.83 8.14 -2.38 -0.02 1.81 15 27 H 0.08 2.13 8.14 -2.39 -0.02 2.11 15 28 H 0.03 0.83 8.14 -2.38 -0.02 0.81 15 29 H 0.34 12.98 8.78 -89.70 -0.79 12.20 15 Total: -1.00 -61.23 231.91 1.73 -59.51 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.26 Total: 15.12 kcal Atomic # 6 Polarization: -47.35 SS G_CDS: 2.56 Total: -44.80 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -2.77 Total: -79.28 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 1.68 Total: 49.45 kcal Total: -61.23 1.73 -59.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260526996.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.547 kcal (2) G-P(sol) polarization free energy of solvation -61.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds