Wall clock time and date at job start Mon Mar 30 2020 02:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35029 * 1 3 3 C 1.40071 * 120.00410 * 2 1 4 4 H 1.08000 * 120.00544 * 154.96248 * 3 2 1 5 5 C 1.40312 * 119.99935 * 334.96408 * 3 2 1 6 6 N 1.30687 * 119.99858 * 342.82000 * 5 3 2 7 7 Si 1.86796 * 120.00045 * 162.82565 * 5 3 2 8 8 H 1.48500 * 109.47528 * 59.99673 * 7 5 3 9 9 H 1.48500 * 109.46960 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46799 * 299.99632 * 7 5 3 11 11 C 1.50706 * 119.99802 * 180.02562 * 2 1 3 12 12 H 1.08999 * 110.32834 * 352.74125 * 11 2 1 13 13 C 1.54907 * 110.37664 * 114.99836 * 11 2 1 14 14 C 1.55137 * 101.65167 * 155.89834 * 13 11 2 15 15 C 1.54309 * 103.02009 * 324.34534 * 14 13 11 16 16 N 1.47443 * 107.23648 * 22.28348 * 15 14 13 17 17 C 1.46904 * 110.99868 * 123.25582 * 16 15 14 18 18 H 1.08006 * 119.99472 * 354.28190 * 1 2 3 19 19 H 1.07998 * 120.00346 * 174.28051 * 1 2 3 20 20 H 0.96999 * 120.00218 * 179.97438 * 6 5 3 21 21 H 1.08996 * 110.98771 * 273.99333 * 13 11 2 22 22 H 1.09000 * 110.99107 * 37.80706 * 13 11 2 23 23 H 1.08996 * 110.70383 * 82.73330 * 14 13 11 24 24 H 1.09005 * 110.70340 * 205.96327 * 14 13 11 25 25 H 1.09002 * 109.89287 * 262.87971 * 15 14 13 26 26 H 1.09003 * 109.89045 * 141.69136 * 15 14 13 27 27 H 1.09007 * 109.47166 * 299.15878 * 17 16 15 28 28 H 1.09001 * 109.47293 * 59.16119 * 17 16 15 29 29 H 1.09004 * 109.46931 * 179.16515 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0546 1.2570 0.3958 5 6 1.4481 2.3711 -0.5142 6 7 0.3975 2.2736 -1.2854 7 14 2.1476 4.0521 -0.0967 8 1 3.5515 4.1364 -0.5732 9 1 1.3355 5.1044 -0.7588 10 1 2.1113 4.2518 1.3744 11 6 2.1038 -1.3052 -0.0006 12 1 1.4150 -2.1401 0.1282 13 6 2.9049 -1.4649 -1.3168 14 6 4.0272 -2.4444 -0.8835 15 6 4.3217 -2.0151 0.5691 16 7 3.1267 -1.3094 1.0669 17 6 2.6111 -1.9435 2.2876 18 1 -0.5399 0.9308 0.0932 19 1 -0.5400 -0.9306 -0.0932 20 1 -0.0193 3.0742 -1.6406 21 1 2.2858 -1.9022 -2.1000 22 1 3.3221 -0.5106 -1.6382 23 1 3.6735 -3.4748 -0.9167 24 1 4.9110 -2.3189 -1.5092 25 1 5.1828 -1.3471 0.5912 26 1 4.5159 -2.8943 1.1835 27 1 2.3284 -2.9736 2.0703 28 1 3.3836 -1.9333 3.0565 29 1 1.7386 -1.3944 2.6416 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260534484.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:30 Heat of formation + Delta-G solvation = -0.756822 kcal Electronic energy + Delta-G solvation = -11176.330244 eV Core-core repulsion = 9291.797127 eV Total energy + Delta-G solvation = -1884.533116 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.96731 -36.22969 -32.97384 -32.71118 -28.63709 -27.03663 -26.36741 -22.29517 -21.73996 -20.72993 -17.59181 -17.00424 -16.80247 -15.92394 -15.07002 -14.50292 -14.41032 -14.05220 -13.54287 -13.35764 -13.00824 -12.69656 -12.46466 -12.23562 -12.10956 -11.95624 -11.60319 -11.36891 -11.20308 -10.81817 -9.26973 -9.03211 -8.39521 -6.10498 1.34924 1.41097 1.51297 2.10448 2.33222 3.17881 3.53947 3.89498 4.06573 4.17832 4.42295 4.55314 4.60754 4.76406 4.79391 4.98473 5.02880 5.05983 5.08495 5.32502 5.37993 5.48726 5.57928 6.13385 6.24764 6.38953 6.47510 6.99485 7.32710 7.49655 8.60975 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.047259 B = 0.013775 C = 0.013321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.335755 B = 2032.197867 C = 2101.478266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.393 4.393 2 C 0.054 3.946 3 C -0.471 4.471 4 H 0.067 0.933 5 C 0.025 3.975 6 N -0.837 5.837 7 Si 0.967 3.033 8 H -0.260 1.260 9 H -0.275 1.275 10 H -0.268 1.268 11 C 0.112 3.888 12 H 0.030 0.970 13 C -0.114 4.114 14 C -0.130 4.130 15 C 0.041 3.959 16 N -0.541 5.541 17 C 0.029 3.971 18 H 0.062 0.938 19 H 0.038 0.962 20 H 0.275 0.725 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.029 0.971 28 H 0.083 0.917 29 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.510 -5.954 2.092 9.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.435 4.435 2 C 0.051 3.949 3 C -0.502 4.502 4 H 0.086 0.914 5 C -0.187 4.187 6 N -0.465 5.465 7 Si 0.790 3.210 8 H -0.184 1.184 9 H -0.200 1.200 10 H -0.193 1.193 11 C 0.004 3.996 12 H 0.047 0.953 13 C -0.152 4.152 14 C -0.168 4.168 15 C -0.086 4.086 16 N -0.265 5.265 17 C -0.119 4.119 18 H 0.080 0.920 19 H 0.057 0.943 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.101 0.899 29 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.512 -5.337 2.094 9.449 hybrid contribution -0.603 0.078 -0.158 0.628 sum 6.909 -5.259 1.937 8.896 Atomic orbital electron populations 1.23063 0.95332 0.96172 1.28915 1.18595 0.92200 0.92509 0.91554 1.19274 1.01218 0.93476 1.36280 0.91439 1.26718 0.94867 1.04416 0.92710 1.69947 1.20378 1.31366 1.24765 0.85500 0.79156 0.77179 0.79206 1.18399 1.19988 1.19251 1.21591 0.92058 0.94754 0.91172 0.95251 1.22588 0.97016 0.99630 0.95999 1.22762 0.98783 0.98625 0.96611 1.22886 0.93509 0.97079 0.95127 1.63334 1.05759 1.52506 1.04898 1.22448 1.00457 0.96142 0.92864 0.92006 0.94330 0.91516 0.91818 0.92231 0.90541 0.89169 0.90904 0.91101 0.95247 0.89871 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.39 -23.31 12.93 67.08 0.87 -22.44 15 2 C 0.05 3.00 4.87 -20.16 -0.10 2.90 15 3 C -0.47 -26.93 8.21 23.22 0.19 -26.74 15 4 H 0.07 3.81 7.73 -2.91 -0.02 3.79 15 5 C 0.02 1.37 5.09 85.37 0.43 1.80 15 6 N -0.84 -48.67 11.03 21.89 0.24 -48.43 15 7 Si 0.97 42.47 29.60 68.60 2.03 44.50 15 8 H -0.26 -10.87 7.11 99.48 0.71 -10.17 15 9 H -0.28 -11.54 7.11 99.48 0.71 -10.83 15 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 11 C 0.11 5.10 2.62 44.64 0.12 5.22 15 12 H 0.03 1.34 7.56 -2.39 -0.02 1.32 15 13 C -0.11 -4.56 6.45 31.98 0.21 -4.36 15 14 C -0.13 -3.83 6.94 31.77 0.22 -3.61 15 15 C 0.04 1.28 6.90 86.64 0.60 1.88 15 16 N -0.54 -21.59 4.68 -890.98 -4.17 -25.76 15 17 C 0.03 1.00 9.13 127.69 1.17 2.17 15 18 H 0.06 3.95 6.26 -2.91 -0.02 3.93 15 19 H 0.04 2.17 7.96 -2.91 -0.02 2.14 15 20 H 0.27 14.72 8.29 -92.71 -0.77 13.95 15 21 H 0.06 2.45 8.14 -2.39 -0.02 2.44 15 22 H 0.06 2.67 7.56 -2.39 -0.02 2.65 15 23 H 0.08 1.98 8.14 -2.39 -0.02 1.96 15 24 H 0.09 2.26 8.14 -2.38 -0.02 2.24 15 25 H 0.07 2.21 8.14 -2.39 -0.02 2.19 15 26 H 0.07 1.81 7.58 -2.39 -0.02 1.79 15 27 H 0.03 0.90 8.09 -2.38 -0.02 0.88 15 28 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 29 H 0.05 1.78 8.14 -2.38 -0.02 1.76 15 Total: -1.00 -64.29 239.64 2.90 -61.39 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.10 Total: 11.48 kcal Atomic # 6 Polarization: -46.88 SS G_CDS: 3.70 Total: -43.18 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: -3.93 Total: -74.19 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -64.29 2.90 -61.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260534484.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.629 kcal (2) G-P(sol) polarization free energy of solvation -64.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds