Wall clock time and date at job start Mon Mar 30 2020 02:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35040 * 1 3 3 C 1.40065 * 120.00009 * 2 1 4 4 H 1.08002 * 120.00181 * 207.78194 * 3 2 1 5 5 C 1.40315 * 119.99987 * 27.78869 * 3 2 1 6 6 N 1.30686 * 119.99885 * 29.74724 * 5 3 2 7 7 Si 1.86800 * 119.99921 * 209.74703 * 5 3 2 8 8 H 1.48498 * 109.47044 * 179.97438 * 7 5 3 9 9 H 1.48499 * 109.47280 * 299.99844 * 7 5 3 10 10 H 1.48504 * 109.47034 * 59.99674 * 7 5 3 11 11 C 1.50700 * 119.99635 * 180.02562 * 2 1 3 12 12 H 1.09000 * 109.88137 * 346.99108 * 11 2 1 13 13 C 1.54320 * 109.88546 * 225.96236 * 11 2 1 14 14 C 1.55390 * 102.90191 * 218.40681 * 13 11 2 15 15 C 1.54909 * 101.74291 * 35.48416 * 14 13 11 16 16 N 1.47439 * 109.88927 * 108.03140 * 11 2 1 17 17 C 1.46898 * 110.99889 * 356.14193 * 16 11 2 18 18 H 1.07996 * 119.99708 * 185.31895 * 1 2 3 19 19 H 1.07997 * 119.99657 * 5.32331 * 1 2 3 20 20 H 0.97003 * 120.00391 * 5.26107 * 6 5 3 21 21 H 1.09002 * 110.70672 * 336.69927 * 13 11 2 22 22 H 1.09002 * 110.70261 * 99.92824 * 13 11 2 23 23 H 1.08996 * 110.87743 * 277.39599 * 14 13 11 24 24 H 1.09007 * 111.05956 * 153.65004 * 14 13 11 25 25 H 1.08995 * 110.37929 * 204.19155 * 15 14 13 26 26 H 1.09005 * 110.46854 * 81.88894 * 15 14 13 27 27 H 1.09001 * 109.47419 * 68.87741 * 17 16 11 28 28 H 1.09005 * 109.47170 * 188.87294 * 17 16 11 29 29 H 1.09001 * 109.47554 * 308.87473 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3504 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0374 1.2669 -0.4360 5 6 1.4705 2.3581 0.5665 6 7 0.6251 2.2408 1.5562 7 14 1.9065 4.0502 -0.0939 8 1 1.1644 5.0856 0.6692 9 1 3.3666 4.2778 0.0529 10 1 1.5346 4.1322 -1.5293 11 6 2.1038 -1.3051 -0.0006 12 1 1.4242 -2.1256 0.2298 13 6 3.2399 -1.2559 1.0427 14 6 4.3961 -2.0132 0.3326 15 6 4.1929 -1.5869 -1.1428 16 7 2.7263 -1.5244 -1.3190 17 6 2.3540 -0.4600 -2.2605 18 1 -0.5399 -0.9313 0.0867 19 1 -0.5399 0.9313 -0.0868 20 1 0.4566 1.3702 1.9495 21 1 3.5262 -0.2253 1.2523 22 1 2.9449 -1.7688 1.9581 23 1 4.2822 -3.0911 0.4467 24 1 5.3665 -1.6836 0.7040 25 1 4.6245 -2.3284 -1.8150 26 1 4.6386 -0.6084 -1.3217 27 1 2.8217 0.4758 -1.9543 28 1 2.6937 -0.7253 -3.2617 29 1 1.2706 -0.3405 -2.2641 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260534489.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:33 Heat of formation + Delta-G solvation = -4.977497 kcal Electronic energy + Delta-G solvation = -11418.465840 eV Core-core repulsion = 9533.749701 eV Total energy + Delta-G solvation = -1884.716139 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.42530 -36.47389 -33.03869 -32.49887 -28.57662 -27.35525 -26.12316 -22.40044 -21.98495 -20.85367 -18.21783 -17.06185 -16.42450 -15.72107 -15.28371 -15.00143 -14.49051 -14.29275 -13.73327 -13.16918 -12.89779 -12.58564 -12.25943 -12.20677 -12.02687 -11.96226 -11.65546 -11.53155 -11.16825 -10.73291 -9.73920 -9.20243 -8.93322 -6.35384 1.37672 1.49077 1.74660 1.95925 2.36962 3.01887 3.46263 3.84383 3.91512 4.14310 4.42821 4.59185 4.65423 4.72199 4.82438 4.95237 4.99173 5.12811 5.17377 5.23732 5.27849 5.44212 5.75011 5.78760 5.99859 6.15238 6.28523 6.68549 6.94041 7.24923 8.20720 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.046887 B = 0.015509 C = 0.014861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.039410 B = 1804.964997 C = 1883.717119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.435 4.435 2 C 0.047 3.953 3 C -0.556 4.556 4 H 0.065 0.935 5 C 0.006 3.994 6 N -0.825 5.825 7 Si 1.103 2.897 8 H -0.278 1.278 9 H -0.256 1.256 10 H -0.269 1.269 11 C 0.099 3.901 12 H 0.053 0.947 13 C -0.129 4.129 14 C -0.116 4.116 15 C 0.039 3.961 16 N -0.530 5.530 17 C 0.024 3.976 18 H 0.047 0.953 19 H 0.045 0.955 20 H 0.281 0.719 21 H 0.060 0.940 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.269 -3.064 -3.178 9.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 C 0.044 3.956 3 C -0.585 4.585 4 H 0.083 0.917 5 C -0.210 4.210 6 N -0.448 5.448 7 Si 0.921 3.079 8 H -0.203 1.203 9 H -0.181 1.181 10 H -0.194 1.194 11 C -0.009 4.009 12 H 0.071 0.929 13 C -0.168 4.168 14 C -0.154 4.154 15 C -0.089 4.089 16 N -0.253 5.253 17 C -0.124 4.124 18 H 0.066 0.934 19 H 0.064 0.936 20 H 0.092 0.908 21 H 0.079 0.921 22 H 0.085 0.915 23 H 0.101 0.899 24 H 0.107 0.893 25 H 0.113 0.887 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.733 -1.965 -3.190 8.593 hybrid contribution -0.147 -0.904 0.389 0.995 sum 7.586 -2.870 -2.801 8.581 Atomic orbital electron populations 1.22890 0.95158 0.96111 1.33488 1.18999 0.92844 0.93158 0.90617 1.20126 1.04002 0.95508 1.38853 0.91731 1.28159 0.91874 1.08534 0.92458 1.70458 1.27925 1.29946 1.16513 0.83206 0.77818 0.70210 0.76629 1.20252 1.18059 1.19422 1.21526 0.95450 0.94471 0.89406 0.92869 1.22844 0.95346 1.00858 0.97709 1.22718 0.98147 1.00570 0.93961 1.23161 0.87787 1.00254 0.97662 1.63826 1.08331 1.44450 1.08704 1.22578 1.00906 0.93408 0.95504 0.93422 0.93613 0.90755 0.92127 0.91521 0.89856 0.89266 0.88686 0.94388 0.94318 0.91205 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -24.79 11.99 67.08 0.80 -23.99 15 2 C 0.05 2.47 2.53 -20.16 -0.05 2.42 15 3 C -0.56 -29.54 5.95 23.22 0.14 -29.40 15 4 H 0.06 3.36 6.52 -2.91 -0.02 3.34 15 5 C 0.01 0.33 4.72 85.37 0.40 0.74 15 6 N -0.83 -47.25 12.57 21.89 0.28 -46.97 15 7 Si 1.10 45.61 30.03 68.60 2.06 47.67 15 8 H -0.28 -11.43 7.11 99.48 0.71 -10.73 15 9 H -0.26 -9.57 7.11 99.48 0.71 -8.86 15 10 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 11 C 0.10 4.49 3.63 44.51 0.16 4.66 15 12 H 0.05 2.49 7.91 -2.39 -0.02 2.47 15 13 C -0.13 -5.07 6.39 31.86 0.20 -4.87 15 14 C -0.12 -3.51 7.08 32.07 0.23 -3.28 15 15 C 0.04 1.27 6.73 86.77 0.58 1.85 15 16 N -0.53 -21.43 5.44 -890.90 -4.85 -26.28 15 17 C 0.02 1.01 8.32 127.69 1.06 2.07 15 18 H 0.05 2.63 7.94 -2.91 -0.02 2.61 15 19 H 0.05 2.81 6.87 -2.91 -0.02 2.79 15 20 H 0.28 16.75 7.14 -92.71 -0.66 16.09 15 21 H 0.06 2.67 6.65 -2.39 -0.02 2.66 15 22 H 0.07 2.45 8.14 -2.39 -0.02 2.43 15 23 H 0.08 2.24 8.14 -2.39 -0.02 2.23 15 24 H 0.09 2.28 8.14 -2.38 -0.02 2.26 15 25 H 0.09 2.60 8.14 -2.39 -0.02 2.58 15 26 H 0.04 1.28 7.64 -2.38 -0.02 1.26 15 27 H 0.04 1.71 4.97 -2.39 -0.01 1.70 15 28 H 0.07 2.43 8.14 -2.38 -0.02 2.41 15 29 H 0.05 2.21 6.71 -2.39 -0.02 2.20 15 Total: -1.00 -60.21 229.77 2.24 -57.97 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 1.22 Total: 17.42 kcal Atomic # 6 Polarization: -53.34 SS G_CDS: 3.53 Total: -49.81 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -4.57 Total: -73.25 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.06 Total: 47.67 kcal Total: -60.21 2.24 -57.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260534489.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.991 kcal (2) G-P(sol) polarization free energy of solvation -60.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds