Wall clock time and date at job start Mon Mar 30 2020 02:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29489 * 1 3 3 Si 1.86795 * 119.99898 * 2 1 4 4 H 1.48500 * 109.47771 * 269.99879 * 3 2 1 5 5 H 1.48499 * 109.47246 * 30.00236 * 3 2 1 6 6 H 1.48510 * 109.47022 * 150.00017 * 3 2 1 7 7 C 1.46669 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99818 * 179.97438 * 7 2 1 9 9 C 1.37948 * 120.00264 * 0.02562 * 7 2 1 10 10 C 1.41389 * 126.40623 * 180.02562 * 9 7 2 11 11 C 1.38016 * 106.83896 * 179.73248 * 10 9 7 12 12 N 1.48005 * 125.97632 * 180.28481 * 11 10 9 13 13 O 1.31696 * 120.00471 * 359.97438 * 12 11 10 14 14 O 1.31698 * 120.00028 * 180.02562 * 12 11 10 15 15 C 1.38209 * 108.04738 * 0.26409 * 11 10 9 16 16 N 1.34446 * 109.24867 * 359.97438 * 15 11 10 17 17 H 0.97002 * 125.65917 * 180.02562 * 16 15 11 18 18 H 0.96998 * 119.99821 * 359.97438 * 1 2 3 19 19 H 1.08002 * 126.58333 * 359.97438 * 10 9 7 20 20 H 1.07994 * 125.37203 * 180.02562 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2288 1.6177 0.0000 4 1 2.4764 2.0465 -1.4000 5 1 1.4263 2.6526 0.7001 6 1 3.5265 1.4401 0.7001 7 6 2.0282 -1.2702 -0.0006 8 1 3.1083 -1.2702 -0.0010 9 6 1.3385 -2.4649 -0.0016 10 6 1.9045 -3.7606 -0.0018 11 6 0.8540 -4.6557 0.0032 12 7 0.9691 -6.1313 0.0108 13 8 2.1573 -6.6992 0.0129 14 8 -0.1168 -6.8764 0.0145 15 6 -0.3242 -3.9332 0.0002 16 7 -0.0385 -2.6195 -0.0058 17 1 -0.6885 -1.8994 -0.0086 18 1 -0.4850 0.8400 0.0004 19 1 2.9569 -4.0033 -0.0015 20 1 -1.3175 -4.3571 0.0032 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260603880.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:11 Heat of formation + Delta-G solvation = 22.547183 kcal Electronic energy + Delta-G solvation = -10292.818415 eV Core-core repulsion = 8072.203736 eV Total energy + Delta-G solvation = -2220.614679 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.77752 -39.24114 -35.69836 -35.10585 -32.17085 -31.35418 -27.56426 -26.03775 -22.02333 -21.25598 -20.61032 -18.74267 -17.69954 -17.32938 -16.73970 -16.45338 -14.81726 -14.80471 -14.27849 -13.37924 -13.35843 -13.02612 -12.71539 -12.19792 -12.04275 -11.84897 -11.66433 -11.42943 -10.20285 -9.61959 -9.18250 -6.49040 -1.24310 0.61394 1.10106 1.41265 1.53744 1.55683 1.89703 2.12247 2.70384 2.96478 4.03403 4.20650 4.69058 4.82841 4.94915 5.21454 5.52477 5.63330 6.08128 6.22865 6.32916 6.58015 7.04857 7.86856 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.100905 B = 0.010372 C = 0.009436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 277.421785 B = 2698.920253 C = 2966.490065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.045 3.955 3 Si 1.013 2.987 4 H -0.258 1.258 5 H -0.259 1.259 6 H -0.258 1.258 7 C -0.475 4.475 8 H 0.107 0.893 9 C 0.230 3.770 10 C -0.377 4.377 11 C -0.064 4.064 12 N 0.045 4.955 13 O -0.303 6.303 14 O -0.261 6.261 15 C 0.056 3.944 16 N -0.513 5.513 17 H 0.442 0.558 18 H 0.318 0.682 19 H 0.118 0.882 20 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.573 8.090 -0.021 8.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.177 4.177 3 Si 0.832 3.168 4 H -0.183 1.183 5 H -0.183 1.183 6 H -0.181 1.181 7 C -0.507 4.507 8 H 0.125 0.875 9 C 0.120 3.880 10 C -0.399 4.399 11 C -0.166 4.166 12 N 0.485 4.515 13 O -0.464 6.464 14 O -0.434 6.434 15 C -0.088 4.088 16 N -0.125 5.125 17 H 0.293 0.707 18 H 0.132 0.868 19 H 0.137 0.863 20 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -2.839 8.668 -0.021 9.121 hybrid contribution 0.142 -0.064 -0.005 0.156 sum -2.696 8.604 -0.026 9.017 Atomic orbital electron populations 1.68076 1.09896 1.34031 1.32066 1.28393 0.95464 1.05125 0.88696 0.84688 0.78894 0.73287 0.79978 1.18267 1.18252 1.18137 1.20102 0.95816 0.87797 1.47019 0.87530 1.18229 0.80802 0.93252 0.95708 1.20325 0.96817 0.89906 1.32813 1.19842 0.98153 0.74401 1.24239 1.49767 1.01300 1.04811 0.95572 1.96147 1.09251 1.77547 1.63433 1.96083 1.22948 1.64097 1.60272 1.22152 0.97870 0.83898 1.04840 1.42830 1.08863 1.06168 1.54679 0.70740 0.86822 0.86344 0.77561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -30.81 10.79 23.24 0.25 -30.56 14 2 C 0.05 1.75 5.67 87.24 0.49 2.25 14 3 Si 1.01 29.53 29.65 68.60 2.03 31.56 14 4 H -0.26 -7.39 7.11 99.48 0.71 -6.69 14 5 H -0.26 -6.96 7.11 99.48 0.71 -6.25 14 6 H -0.26 -7.70 7.11 99.48 0.71 -6.99 14 7 C -0.48 -21.57 9.55 24.40 0.23 -21.34 14 8 H 0.11 4.72 7.94 -2.91 -0.02 4.70 14 9 C 0.23 11.01 6.72 38.78 0.26 11.27 14 10 C -0.38 -19.26 10.66 22.99 0.25 -19.02 14 11 C -0.06 -3.17 7.19 36.32 0.26 -2.90 14 12 N 0.05 2.36 4.98 -46.61 -0.23 2.13 14 13 O -0.30 -16.72 19.77 3.52 0.07 -16.65 14 14 O -0.26 -13.02 19.77 3.52 0.07 -12.95 14 15 C 0.06 2.32 11.67 84.29 0.98 3.31 14 16 N -0.51 -21.58 5.75 -186.07 -1.07 -22.65 14 17 H 0.44 16.99 6.33 -92.71 -0.59 16.41 14 18 H 0.32 10.33 8.27 -92.71 -0.77 9.56 14 19 H 0.12 6.17 8.06 -2.91 -0.02 6.15 14 20 H 0.21 6.68 8.06 -2.91 -0.02 6.66 14 Total: -1.00 -56.30 202.13 4.30 -52.00 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.70 Total: 23.55 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 2.48 Total: -26.44 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -1.05 Total: -51.08 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: 0.14 Total: -29.60 kcal Atomic # 14 Polarization: 29.53 SS G_CDS: 2.03 Total: 31.56 kcal Total: -56.30 4.30 -52.00 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260603880.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.549 kcal (2) G-P(sol) polarization free energy of solvation -56.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds