Wall clock time and date at job start Mon Mar 30 2020 02:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30489 * 1 3 3 Si 1.86794 * 120.00343 * 2 1 4 4 H 1.48496 * 109.47461 * 240.00394 * 3 2 1 5 5 H 1.48507 * 109.46967 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.47258 * 120.00022 * 3 2 1 7 7 C 1.40589 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00602 * 179.97438 * 7 2 1 9 9 C 1.39654 * 119.99957 * 359.97438 * 7 2 1 10 10 N 1.37101 * 126.74973 * 0.16909 * 9 7 2 11 11 H 0.97002 * 125.96728 * 0.02562 * 10 9 7 12 12 N 1.39908 * 108.05855 * 180.28132 * 10 9 7 13 13 C 1.30853 * 109.62203 * 359.72616 * 12 10 9 14 14 C 1.40350 * 108.85701 * 0.02562 * 13 12 10 15 15 C 1.46942 * 126.52493 * 180.02562 * 14 13 12 16 16 O 1.21571 * 120.00522 * 180.02562 * 15 14 13 17 17 O 1.34854 * 119.99557 * 0.02562 * 15 14 13 18 18 H 0.96998 * 120.00370 * 359.97438 * 1 2 3 19 19 H 1.07999 * 125.57647 * 180.02562 * 13 12 10 20 20 H 0.96700 * 117.00005 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3049 0.0000 0.0000 3 14 2.2390 1.6176 0.0000 4 1 3.0926 1.6964 -1.2125 5 1 1.2740 2.7464 0.0006 6 1 3.0928 1.6963 1.2126 7 6 2.0078 -1.2175 -0.0005 8 1 3.0878 -1.2177 -0.0010 9 6 1.3096 -2.4270 -0.0005 10 7 -0.0519 -2.5881 -0.0033 11 1 -0.7100 -1.8754 -0.0060 12 7 -0.3263 -3.9600 0.0044 13 6 0.7961 -4.6326 0.0057 14 6 1.8679 -3.7265 -0.0005 15 6 3.2981 -4.0637 -0.0019 16 8 4.1314 -3.1785 -0.0070 17 8 3.6863 -5.3551 0.0026 18 1 -0.4850 0.8400 0.0004 19 1 0.8835 -5.7090 0.0107 20 1 4.6379 -5.5275 0.0019 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260635136.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:13 Heat of formation + Delta-G solvation = -52.333574 kcal Electronic energy + Delta-G solvation = -10567.225715 eV Core-core repulsion = 8343.363963 eV Total energy + Delta-G solvation = -2223.861752 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.36455 -38.11604 -34.76537 -34.09175 -29.83740 -29.40717 -25.92984 -22.38818 -20.36303 -19.09987 -18.04762 -16.74276 -15.62102 -14.94689 -14.31338 -13.90013 -13.09726 -12.72299 -12.61432 -12.12761 -11.45589 -11.32850 -11.23625 -10.42419 -10.40139 -9.79444 -9.40307 -8.93277 -8.23947 -7.44578 -7.35232 -4.97502 2.67705 2.90887 2.96619 3.16466 3.55996 3.68098 4.28967 4.42916 4.82151 5.12514 6.20426 6.67415 6.84363 6.87929 7.22893 7.60369 7.64373 8.16598 8.23239 8.38301 9.18805 9.27241 9.48040 9.70901 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.046165 B = 0.016656 C = 0.012293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.373153 B = 1680.659641 C = 2277.185968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.070 3.930 3 Si 0.944 3.056 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.415 4.415 8 H 0.122 0.878 9 C 0.317 3.683 10 N -0.503 5.503 11 H 0.443 0.557 12 N -0.370 5.370 13 C 0.102 3.898 14 C -0.413 4.413 15 C 0.552 3.448 16 O -0.561 6.561 17 O -0.534 6.534 18 H 0.298 0.702 19 H 0.161 0.839 20 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.345 -0.223 0.009 2.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.150 4.150 3 Si 0.767 3.233 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.449 4.449 8 H 0.139 0.861 9 C 0.193 3.807 10 N -0.225 5.225 11 H 0.297 0.703 12 N -0.190 5.190 13 C -0.088 4.088 14 C -0.426 4.426 15 C 0.404 3.596 16 O -0.455 6.455 17 O -0.344 6.344 18 H 0.110 0.890 19 H 0.178 0.822 20 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 0.613 0.095 0.007 0.620 hybrid contribution 1.433 0.918 0.001 1.702 sum 2.046 1.013 0.009 2.283 Atomic orbital electron populations 1.68686 1.08412 1.31534 1.35662 1.26430 0.94878 1.03235 0.90432 0.85736 0.79545 0.77195 0.80819 1.18160 1.20031 1.18166 1.19635 0.97149 0.87505 1.40641 0.86052 1.18419 0.83108 0.92463 0.86751 1.47016 1.05867 1.04441 1.65141 0.70313 1.76590 1.23682 0.89314 1.29379 1.23235 0.90007 0.98513 0.97065 1.18601 0.88945 0.92876 1.42210 1.19886 0.89082 0.78469 0.72136 1.90719 1.54516 1.48457 1.51812 1.84636 1.30974 1.30896 1.87939 0.88988 0.82176 0.75475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.07 10.73 55.58 0.60 -18.48 14 2 C 0.07 1.65 5.51 -17.24 -0.09 1.56 14 3 Si 0.94 17.97 29.56 -169.99 -5.03 12.95 14 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 14 5 H -0.28 -4.96 7.11 56.52 0.40 -4.56 14 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 14 7 C -0.41 -11.00 8.96 -38.17 -0.34 -11.35 14 8 H 0.12 3.29 6.11 -52.49 -0.32 2.97 14 9 C 0.32 8.68 6.80 -83.76 -0.57 8.11 14 10 N -0.50 -13.28 7.07 32.57 0.23 -13.05 14 11 H 0.44 11.31 6.33 -182.74 -1.16 10.15 14 12 N -0.37 -9.41 12.60 30.73 0.39 -9.03 14 13 C 0.10 2.45 11.78 -17.17 -0.20 2.25 14 14 C -0.41 -10.75 6.19 -104.36 -0.65 -11.40 14 15 C 0.55 13.36 8.32 34.26 0.28 13.64 14 16 O -0.56 -14.69 15.71 -19.32 -0.30 -14.99 14 17 O -0.53 -10.22 13.27 -40.91 -0.54 -10.77 14 18 H 0.30 6.22 8.29 -40.82 -0.34 5.88 14 19 H 0.16 3.22 8.06 -52.49 -0.42 2.80 14 20 H 0.39 5.37 9.11 45.56 0.42 5.78 14 LS Contribution 195.73 15.07 2.95 2.95 Total: -1.00 -29.68 195.73 -3.90 -33.58 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -0.62 Total: 14.03 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.57 Total: 2.81 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 1.21 Total: -40.56 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.85 Total: -25.76 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 2.95 Total: 2.95 kcal Total: -29.68 -3.90 -33.58 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260635136.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.755 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds