Wall clock time and date at job start Mon Mar 30 2020 02:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86799 * 119.99957 * 2 1 4 4 H 1.48494 * 109.46971 * 240.00344 * 3 2 1 5 5 H 1.48492 * 109.46857 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47056 * 120.00439 * 3 2 1 7 7 C 1.38645 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99681 * 179.97438 * 7 2 1 9 9 O 1.34818 * 120.00136 * 359.97438 * 7 2 1 10 10 C 1.35826 * 116.99601 * 185.05712 * 9 7 2 11 11 C 1.39200 * 120.81202 * 354.53678 * 10 9 7 12 12 N 1.32250 * 119.08895 * 180.02562 * 11 10 9 13 13 C 1.32314 * 120.83434 * 0.02562 * 12 11 10 14 14 O 1.35505 * 119.11399 * 179.97438 * 13 12 11 15 15 N 1.32300 * 121.76910 * 0.25622 * 13 12 11 16 16 C 1.32264 * 120.83482 * 359.48021 * 15 13 12 17 17 H 0.96999 * 120.00126 * 359.97438 * 1 2 3 18 18 H 1.07998 * 120.45179 * 0.02562 * 11 10 9 19 19 H 0.96699 * 113.99987 * 89.99559 * 14 13 12 20 20 H 1.07996 * 120.45680 * 180.25294 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2847 2.7463 0.0006 6 1 3.1035 1.6963 1.2124 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3683 -0.0005 10 6 2.0705 -3.5050 0.1056 11 6 3.4617 -3.4575 0.0953 12 7 4.1444 -4.5853 0.2003 13 6 3.5214 -5.7471 0.3134 14 8 4.2554 -6.8813 0.4183 15 7 2.2011 -5.8317 0.3214 16 6 1.4517 -4.7461 0.2257 17 1 -0.4850 0.8400 0.0004 18 1 3.9764 -2.5126 0.0029 19 1 4.4721 -7.1268 1.3281 20 1 0.3744 -4.8218 0.2369 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260794530.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:05 Heat of formation + Delta-G solvation = -42.121321 kcal Electronic energy + Delta-G solvation = -10334.155462 eV Core-core repulsion = 8110.736546 eV Total energy + Delta-G solvation = -2223.418916 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.06522 -39.69644 -37.76253 -34.71189 -34.44383 -30.81409 -27.72519 -25.52169 -24.36549 -20.66016 -20.05023 -19.13904 -18.06581 -17.23699 -16.26626 -16.02626 -15.37365 -15.23013 -14.45562 -13.99077 -13.65613 -12.95360 -12.88364 -12.69627 -12.16755 -11.88323 -11.86302 -10.94963 -10.04168 -9.50375 -8.58489 -6.26388 0.02393 0.05518 1.39963 1.49359 1.55549 2.09852 2.30256 2.67732 2.99407 3.11813 3.38112 3.69133 4.13112 4.38433 4.80234 5.13182 5.31514 5.80878 5.87626 6.69281 6.83891 7.06865 7.45224 8.61044 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.091635 B = 0.010568 C = 0.009524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 305.486990 B = 2648.926047 C = 2939.349884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.008 4.008 3 Si 1.019 2.981 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.423 4.423 8 H 0.112 0.888 9 O -0.188 6.188 10 C 0.027 3.973 11 C 0.048 3.952 12 N -0.494 5.494 13 C 0.376 3.624 14 O -0.463 6.463 15 N -0.490 5.490 16 C 0.100 3.900 17 H 0.279 0.721 18 H 0.183 0.817 19 H 0.416 0.584 20 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.073 -2.314 2.071 5.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.209 4.209 3 Si 0.838 3.162 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.498 4.498 8 H 0.129 0.871 9 O -0.089 6.089 10 C -0.031 4.031 11 C -0.120 4.120 12 N -0.219 5.219 13 C 0.073 3.927 14 O -0.267 6.267 15 N -0.215 5.215 16 C -0.070 4.070 17 H 0.089 0.911 18 H 0.200 0.800 19 H 0.276 0.724 20 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.211 -3.063 1.530 6.235 hybrid contribution -0.234 1.264 0.381 1.341 sum 4.977 -1.798 1.911 5.626 Atomic orbital electron populations 1.70142 1.08044 1.29729 1.45677 1.26605 0.96803 1.02707 0.94768 0.84623 0.77484 0.73895 0.80209 1.17979 1.19702 1.17920 1.21892 0.92993 0.80747 1.54151 0.87085 1.83999 1.34828 1.11882 1.78206 1.21354 0.93371 0.90418 0.97963 1.23186 0.90601 0.96639 1.01593 1.67652 1.42602 0.98517 1.13112 1.20008 0.84582 0.85479 1.02593 1.84718 1.70640 1.36630 1.34733 1.67785 1.07176 1.32365 1.14132 1.22517 1.01107 0.83908 0.99497 0.91132 0.80050 0.72414 0.79458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.75 13.67 21.61 0.30 -49.45 14 2 C -0.01 -0.38 5.49 84.83 0.47 0.08 14 3 Si 1.02 38.06 29.55 68.60 2.03 40.09 14 4 H -0.26 -9.01 7.11 99.48 0.71 -8.30 14 5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 14 6 H -0.26 -8.95 7.11 99.48 0.71 -8.25 14 7 C -0.42 -21.63 9.51 67.92 0.65 -20.98 14 8 H 0.11 5.06 5.28 -2.91 -0.02 5.04 14 9 O -0.19 -9.89 9.78 -23.46 -0.23 -10.12 14 10 C 0.03 1.20 6.69 22.73 0.15 1.36 14 11 C 0.05 2.01 10.43 84.86 0.88 2.89 14 12 N -0.49 -20.20 10.45 -312.98 -3.27 -23.47 14 13 C 0.38 14.73 8.71 180.58 1.57 16.30 14 14 O -0.46 -14.93 13.64 -88.07 -1.20 -16.14 14 15 N -0.49 -19.49 10.45 -312.98 -3.27 -22.76 14 16 C 0.10 4.03 11.27 84.86 0.96 4.99 14 17 H 0.28 14.15 8.31 -92.71 -0.77 13.38 14 18 H 0.18 7.12 5.77 -2.91 -0.02 7.10 14 19 H 0.42 8.61 9.06 -74.06 -0.67 7.94 14 20 H 0.19 6.66 8.06 -2.91 -0.02 6.64 14 Total: -1.00 -62.49 197.45 -0.35 -62.85 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.62 Total: 14.35 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 4.68 Total: 4.64 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -6.25 Total: -95.68 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -1.43 Total: -26.25 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Total: -62.49 -0.35 -62.85 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260794530.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.724 kcal (2) G-P(sol) polarization free energy of solvation -62.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds