Wall clock time and date at job start Mon Mar 30 2020 02:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48617 * 110.99914 * 2 1 4 4 C 1.54969 * 103.29490 * 200.70099 * 3 2 1 5 5 H 1.09000 * 110.71987 * 278.86796 * 4 3 2 6 6 C 1.50701 * 110.72223 * 155.59276 * 4 3 2 7 7 H 1.08005 * 119.99961 * 241.45604 * 6 4 3 8 8 C 1.37873 * 119.99750 * 61.45112 * 6 4 3 9 9 N 1.31516 * 120.00473 * 0.02562 * 8 6 4 10 10 Si 1.86804 * 119.99927 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46895 * 60.00304 * 10 8 6 12 12 H 1.48496 * 109.47401 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47061 * 300.00561 * 10 8 6 14 14 C 1.54693 * 102.94174 * 37.22872 * 4 3 2 15 15 C 1.47565 * 110.99614 * 242.73828 * 2 1 3 16 16 C 1.52648 * 120.82446 * 289.81474 * 15 2 1 17 17 C 1.52657 * 120.79592 * 1.24814 * 15 2 1 18 18 H 1.09004 * 109.47163 * 177.26293 * 1 2 3 19 19 H 1.09005 * 109.46971 * 297.26138 * 1 2 3 20 20 H 1.08996 * 109.47503 * 57.25930 * 1 2 3 21 21 H 1.09006 * 110.65452 * 319.15018 * 3 2 1 22 22 H 1.09003 * 110.65747 * 82.08191 * 3 2 1 23 23 H 0.96999 * 120.00362 * 179.97438 * 9 8 6 24 24 H 1.08996 * 110.33843 * 219.18626 * 14 4 3 25 25 H 1.09001 * 110.33750 * 96.93660 * 14 4 3 26 26 H 1.08992 * 117.50625 * 2.73180 * 16 15 2 27 27 H 1.08998 * 117.50367 * 217.65494 * 16 15 2 28 28 H 1.09007 * 117.51007 * 142.29931 * 17 15 2 29 29 H 1.09004 * 117.51081 * 357.21893 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0016 1.3875 0.0000 4 6 3.4464 1.2146 -0.5331 5 1 4.1151 0.8891 0.2637 6 6 3.9411 2.4940 -1.1571 7 1 4.2113 2.5158 -2.2026 8 6 4.0488 3.6368 -0.3933 9 7 3.7203 3.6103 0.8799 10 14 4.6629 5.2226 -1.1664 11 1 3.7564 5.6161 -2.2750 12 1 4.6868 6.2964 -0.1411 13 1 6.0339 5.0157 -1.6979 14 6 3.2908 0.1083 -1.6031 15 6 1.9977 -0.6311 -1.2246 16 6 1.8631 -2.1347 -1.4504 17 6 1.0538 -1.1551 -2.3039 18 1 -0.3634 -1.0265 -0.0491 19 1 -0.3633 0.4707 0.9136 20 1 -0.3634 0.5558 -0.8643 21 1 1.4190 2.0229 -0.6672 22 1 2.0082 1.7968 1.0102 23 1 3.7964 4.4141 1.4174 24 1 4.1407 -0.5733 -1.5696 25 1 3.1978 0.5509 -2.5949 26 1 1.3246 -2.7105 -0.6979 27 1 2.6971 -2.6486 -1.9283 28 1 1.3555 -1.0247 -3.3433 29 1 -0.0172 -1.0866 -2.1127 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260906280.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:53 Heat of formation + Delta-G solvation = 7.363148 kcal Electronic energy + Delta-G solvation = -11174.284631 eV Core-core repulsion = 9290.103623 eV Total energy + Delta-G solvation = -1884.181008 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.47697 -35.95929 -34.37226 -32.67614 -27.78572 -26.92241 -25.06935 -23.23998 -21.64085 -19.78658 -18.44243 -16.93422 -16.42483 -16.01107 -15.49858 -14.71930 -14.38729 -14.03701 -13.35735 -13.09814 -12.89428 -12.76742 -12.46615 -12.41356 -12.14375 -11.93429 -11.52039 -11.16070 -10.93857 -10.78502 -10.51314 -9.04368 -8.14671 -6.26245 1.41888 1.43455 1.51356 2.41923 2.86701 3.15411 3.28495 3.85012 4.03318 4.15194 4.27474 4.55848 4.64104 4.66832 4.76836 4.80195 4.89400 5.02699 5.08209 5.14188 5.28428 5.30836 5.55428 5.70429 5.85836 6.07327 6.34012 6.36526 6.84352 7.41883 8.94380 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.066266 B = 0.012200 C = 0.011251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.438639 B = 2294.625060 C = 2488.143985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.509 5.509 3 C 0.079 3.921 4 C 0.042 3.958 5 H 0.001 0.999 6 C -0.537 4.537 7 H 0.057 0.943 8 C 0.013 3.987 9 N -0.918 5.918 10 Si 0.958 3.042 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.269 1.269 14 C -0.080 4.080 15 C 0.005 3.995 16 C -0.146 4.146 17 C -0.192 4.192 18 H 0.082 0.918 19 H 0.064 0.936 20 H 0.025 0.975 21 H 0.012 0.988 22 H 0.056 0.944 23 H 0.262 0.738 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.089 -6.882 -4.666 9.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.231 5.231 3 C -0.049 4.049 4 C 0.023 3.977 5 H 0.020 0.980 6 C -0.575 4.575 7 H 0.075 0.925 8 C -0.186 4.186 9 N -0.557 5.557 10 Si 0.783 3.217 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.194 1.194 14 C -0.118 4.118 15 C -0.086 4.086 16 C -0.184 4.184 17 C -0.230 4.230 18 H 0.101 0.899 19 H 0.083 0.917 20 H 0.044 0.956 21 H 0.030 0.970 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.119 0.881 27 H 0.126 0.874 28 H 0.119 0.881 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.953 -7.041 -4.006 9.495 hybrid contribution 0.048 1.507 -0.654 1.644 sum -4.905 -5.534 -4.659 8.740 Atomic orbital electron populations 1.22528 0.87944 1.02090 1.00566 1.64509 1.08371 1.16165 1.34020 1.22896 0.96636 0.86197 0.99165 1.19476 0.92153 0.92968 0.93070 0.98050 1.21459 1.44469 0.95286 0.96296 0.92485 1.25824 0.95260 1.02274 0.95254 1.70082 1.48789 1.29594 1.07232 0.85608 0.79117 0.78795 0.78133 1.19563 1.20866 1.19433 1.21870 0.94498 0.96511 0.98940 1.22392 0.97391 0.96851 0.91929 1.23052 1.02721 0.90678 1.01941 1.23463 0.98172 1.04643 0.96763 0.89891 0.91736 0.95629 0.96972 0.92586 0.92861 0.92033 0.92351 0.88113 0.87375 0.88149 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 8.31 127.69 1.06 1.63 15 2 N -0.51 -21.29 5.56 -862.32 -4.79 -26.08 15 3 C 0.08 3.96 5.28 86.64 0.46 4.42 15 4 C 0.04 2.25 2.99 -10.29 -0.03 2.22 15 5 H 0.00 0.08 8.14 -2.39 -0.02 0.06 15 6 C -0.54 -30.24 8.51 25.60 0.22 -30.03 15 7 H 0.06 3.12 7.59 -2.91 -0.02 3.10 15 8 C 0.01 0.74 5.33 84.65 0.45 1.19 15 9 N -0.92 -54.15 12.05 21.45 0.26 -53.89 15 10 Si 0.96 43.82 29.54 68.60 2.03 45.85 15 11 H -0.27 -11.98 7.11 99.48 0.71 -11.28 15 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 14 C -0.08 -3.47 6.22 31.40 0.20 -3.27 15 15 C 0.00 0.19 2.72 3.40 0.01 0.20 15 16 C -0.15 -4.20 10.24 30.50 0.31 -3.89 15 17 C -0.19 -5.60 9.39 30.51 0.29 -5.32 15 18 H 0.08 2.31 7.49 -2.39 -0.02 2.29 15 19 H 0.06 2.11 8.14 -2.38 -0.02 2.09 15 20 H 0.03 0.84 7.47 -2.39 -0.02 0.83 15 21 H 0.01 0.63 7.85 -2.38 -0.02 0.61 15 22 H 0.06 3.12 7.43 -2.39 -0.02 3.10 15 23 H 0.26 14.69 8.31 -92.71 -0.77 13.92 15 24 H 0.06 2.48 8.14 -2.39 -0.02 2.46 15 25 H 0.06 2.49 7.70 -2.39 -0.02 2.47 15 26 H 0.10 2.68 8.14 -2.39 -0.02 2.66 15 27 H 0.11 2.76 8.14 -2.39 -0.02 2.74 15 28 H 0.10 2.73 8.14 -2.38 -0.02 2.71 15 29 H 0.10 2.75 6.34 -2.39 -0.02 2.74 15 Total: -1.00 -61.23 236.48 1.56 -59.67 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.11 Total: 7.31 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 2.96 Total: -32.84 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -4.53 Total: -79.98 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -61.23 1.56 -59.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906280.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.030 kcal (2) G-P(sol) polarization free energy of solvation -61.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds