Wall clock time and date at job start Mon Mar 30 2020 02:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48619 * 111.00017 * 2 1 4 4 C 1.54967 * 103.29571 * 159.29960 * 3 2 1 5 5 H 1.08997 * 110.71954 * 81.14226 * 4 3 2 6 6 C 1.50709 * 110.71591 * 204.40978 * 4 3 2 7 7 H 1.08001 * 119.99460 * 118.54835 * 6 4 3 8 8 C 1.37872 * 120.00019 * 298.54330 * 6 4 3 9 9 N 1.31509 * 120.00345 * 0.02562 * 8 6 4 10 10 Si 1.86806 * 119.99677 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47236 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47115 * 120.00300 * 10 8 6 13 13 H 1.48500 * 109.47110 * 240.00306 * 10 8 6 14 14 C 1.54679 * 102.94215 * 322.77184 * 4 3 2 15 15 C 1.47565 * 110.99545 * 117.25466 * 2 1 3 16 16 C 1.52643 * 120.82602 * 70.17657 * 15 2 1 17 17 C 1.52658 * 120.79651 * 358.74390 * 15 2 1 18 18 H 1.09005 * 109.46543 * 60.12986 * 1 2 3 19 19 H 1.09000 * 109.47399 * 180.12227 * 1 2 3 20 20 H 1.09000 * 109.47754 * 300.13352 * 1 2 3 21 21 H 1.09001 * 110.65884 * 40.84716 * 3 2 1 22 22 H 1.09002 * 110.65429 * 277.74927 * 3 2 1 23 23 H 0.97005 * 120.00125 * 179.97438 * 9 8 6 24 24 H 1.09004 * 110.34046 * 140.80332 * 14 4 3 25 25 H 1.08993 * 110.34298 * 263.05409 * 14 4 3 26 26 H 1.09001 * 117.50936 * 357.26690 * 16 15 2 27 27 H 1.09000 * 117.51215 * 142.34068 * 16 15 2 28 28 H 1.09006 * 117.50974 * 217.70181 * 17 15 2 29 29 H 1.08995 * 117.50733 * 2.77888 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0016 1.3875 0.0000 4 6 3.4463 1.2146 0.5331 5 1 4.1151 0.8893 -0.2638 6 6 3.9410 2.4942 1.1571 7 1 4.2112 2.5158 2.2025 8 6 4.0487 3.6369 0.3933 9 7 3.7194 3.6106 -0.8796 10 14 4.6626 5.2227 1.1667 11 1 4.9651 4.9890 2.6016 12 1 5.8943 5.6698 0.4680 13 1 3.6168 6.2700 1.0450 14 6 3.2908 0.1084 1.6030 15 6 1.9977 -0.6309 1.2247 16 6 1.8629 -2.1345 1.4508 17 6 1.0537 -1.1546 2.3042 18 1 -0.3632 0.5119 -0.8912 19 1 -0.3634 -1.0276 0.0022 20 1 -0.3634 0.5159 0.8887 21 1 1.4191 2.0230 0.6671 22 1 2.0109 1.7957 -1.0106 23 1 3.7948 4.4148 -1.4169 24 1 4.1406 -0.5734 1.5694 25 1 3.1980 0.5508 2.5948 26 1 1.3242 -2.7104 0.6984 27 1 2.6969 -2.6485 1.9287 28 1 1.3555 -1.0241 3.3435 29 1 -0.0171 -1.0860 2.1130 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260906282.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:56 Heat of formation + Delta-G solvation = 25.497277 kcal Electronic energy + Delta-G solvation = -11173.673743 eV Core-core repulsion = 9290.279090 eV Total energy + Delta-G solvation = -1883.394653 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.89212 -34.17941 -32.61690 -30.80129 -25.88069 -25.22179 -23.28432 -21.95870 -19.71095 -18.23113 -16.37450 -15.31386 -14.56460 -14.35892 -13.76924 -13.17283 -12.78100 -12.14817 -11.64643 -11.55512 -11.09747 -10.99412 -10.89658 -10.60038 -10.47506 -10.24133 -9.85740 -9.40200 -9.13955 -8.84708 -8.41141 -7.44782 -6.03259 -4.06636 3.29049 3.37221 3.41040 4.27358 4.43055 4.77815 5.25761 5.31813 5.42860 5.63222 5.72696 5.99658 6.02157 6.19650 6.24550 6.33687 6.43619 6.51125 6.57374 6.91118 6.95383 7.16552 7.58708 7.67553 7.84140 7.92825 8.06349 8.43624 8.96453 9.57836 11.06371 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.066265 B = 0.012200 C = 0.011251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.442402 B = 2294.506779 C = 2488.051529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.498 5.498 3 C 0.060 3.940 4 C 0.052 3.948 5 H 0.038 0.962 6 C -0.515 4.515 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.888 5.888 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 C -0.088 4.088 15 C 0.044 3.956 16 C -0.169 4.169 17 C -0.210 4.210 18 H 0.062 0.938 19 H 0.054 0.946 20 H 0.024 0.976 21 H 0.030 0.970 22 H 0.087 0.913 23 H 0.260 0.740 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.409 -6.006 3.391 8.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.220 5.220 3 C -0.066 4.066 4 C 0.033 3.967 5 H 0.056 0.944 6 C -0.554 4.554 7 H 0.076 0.924 8 C -0.139 4.139 9 N -0.526 5.526 10 Si 0.719 3.281 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.126 4.126 15 C -0.047 4.047 16 C -0.207 4.207 17 C -0.249 4.249 18 H 0.081 0.919 19 H 0.073 0.927 20 H 0.043 0.957 21 H 0.048 0.952 22 H 0.105 0.895 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.266 -6.147 2.728 7.964 hybrid contribution -0.164 1.291 1.043 1.668 sum -4.430 -4.856 3.771 7.578 Atomic orbital electron populations 1.22446 0.90118 1.00350 1.00266 1.64576 1.06224 1.18784 1.32406 1.23361 0.97204 0.84273 1.01777 1.19549 0.92288 0.92087 0.92779 0.94406 1.21193 1.43925 0.94077 0.96168 0.92407 1.25004 0.95184 0.98928 0.94820 1.69962 1.48151 1.28536 1.06000 0.86548 0.78511 0.83536 0.79496 1.19788 1.20961 1.21056 1.22031 0.92499 0.97434 1.00604 1.22371 0.97247 0.94286 0.90776 1.22923 1.02478 0.92948 1.02394 1.23366 0.97943 1.06611 0.97028 0.91913 0.92739 0.95731 0.95173 0.89471 0.92986 0.92792 0.92110 0.89391 0.89079 0.89301 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.29 60.06 0.50 0.80 15 2 N -0.50 -10.57 5.56 -223.92 -1.24 -11.82 15 3 C 0.06 1.47 5.28 -1.83 -0.01 1.46 15 4 C 0.05 1.34 2.99 -89.85 -0.27 1.07 15 5 H 0.04 1.06 8.14 -51.93 -0.42 0.63 15 6 C -0.52 -14.21 8.51 -34.44 -0.29 -14.50 15 7 H 0.06 1.57 7.59 -52.49 -0.40 1.17 15 8 C 0.06 1.73 5.33 -17.82 -0.10 1.64 15 9 N -0.89 -25.46 12.05 55.43 0.67 -24.79 15 10 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 15 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 14 C -0.09 -1.91 6.22 -25.49 -0.16 -2.07 15 15 C 0.04 0.87 2.72 -131.24 -0.36 0.52 15 16 C -0.17 -2.76 10.28 -26.88 -0.28 -3.03 15 17 C -0.21 -3.46 9.38 -26.87 -0.25 -3.71 15 18 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 19 H 0.05 0.85 7.70 -51.93 -0.40 0.45 15 20 H 0.02 0.43 7.34 -51.93 -0.38 0.05 15 21 H 0.03 0.76 7.89 -51.93 -0.41 0.35 15 22 H 0.09 2.31 7.42 -51.93 -0.39 1.93 15 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 15 25 H 0.06 1.31 7.70 -51.93 -0.40 0.91 15 26 H 0.09 1.36 8.14 -51.93 -0.42 0.94 15 27 H 0.09 1.35 8.14 -51.93 -0.42 0.93 15 28 H 0.09 1.38 8.14 -51.93 -0.42 0.96 15 29 H 0.09 1.39 6.34 -51.93 -0.33 1.06 15 LS Contribution 236.60 15.07 3.57 3.57 Total: -1.00 -28.26 236.60 -7.62 -35.88 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.37 Total: -1.20 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -1.21 Total: -17.82 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.58 Total: -36.61 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.26 -7.62 -35.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906282.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.373 kcal (2) G-P(sol) polarization free energy of solvation -28.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds