Wall clock time and date at job start Mon Mar 30 2020 02:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46651 * 110.99833 * 2 1 4 4 C 1.53310 * 108.81910 * 179.00115 * 3 2 1 5 5 C 1.53071 * 108.35296 * 73.68374 * 4 3 2 6 6 C 1.52944 * 109.51582 * 307.28038 * 5 4 3 7 7 H 1.09001 * 115.22596 * 231.80915 * 6 5 4 8 8 C 1.53591 * 116.04165 * 89.12510 * 6 5 4 9 9 H 1.09005 * 117.52929 * 356.58598 * 8 6 5 10 10 C 1.50703 * 117.58437 * 141.81685 * 8 6 5 11 11 H 1.07998 * 119.99781 * 359.67329 * 10 8 6 12 12 C 1.37871 * 119.99702 * 179.67141 * 10 8 6 13 13 N 1.31519 * 120.00451 * 0.02562 * 12 10 8 14 14 Si 1.86808 * 119.99721 * 180.02562 * 12 10 8 15 15 H 1.48490 * 109.47113 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.46985 * 120.00252 * 14 12 10 17 17 H 1.48504 * 109.47130 * 239.99715 * 14 12 10 18 18 C 1.45867 * 110.99670 * 234.01122 * 2 1 3 19 19 H 1.09000 * 114.62177 * 291.61811 * 18 2 1 20 20 H 1.08992 * 109.47459 * 185.98979 * 1 2 3 21 21 H 1.09004 * 109.47040 * 305.99130 * 1 2 3 22 22 H 1.09000 * 109.47033 * 65.99082 * 1 2 3 23 23 H 1.08997 * 109.58033 * 298.80466 * 3 2 1 24 24 H 1.08998 * 109.57994 * 59.20025 * 3 2 1 25 25 H 1.08998 * 109.69365 * 313.96704 * 4 3 2 26 26 H 1.09002 * 109.71900 * 193.41324 * 4 3 2 27 27 H 1.08997 * 109.46698 * 187.26794 * 5 4 3 28 28 H 1.09002 * 109.45788 * 67.28843 * 5 4 3 29 29 H 0.96995 * 120.00034 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9946 1.3691 0.0000 4 6 3.5264 1.3109 0.0253 5 6 4.0151 0.8760 -1.3586 6 6 3.3043 -0.4145 -1.7692 7 1 3.9599 -1.2238 -2.0906 8 6 1.9753 -0.2429 -2.5196 9 1 1.6021 0.7719 -2.6578 10 6 1.6788 -1.2035 -3.6424 11 1 2.3919 -1.9737 -3.8965 12 6 0.4972 -1.0989 -4.3450 13 7 -0.3711 -0.1607 -4.0358 14 14 0.1293 -2.2901 -5.7363 15 1 1.2584 -3.2431 -5.8834 16 1 -1.1154 -3.0399 -5.4299 17 1 -0.0475 -1.5336 -7.0019 18 6 1.9917 -0.8002 -1.1019 19 1 1.8136 -1.8716 -1.0095 20 1 -0.3634 -1.0220 0.1072 21 1 -0.3633 0.6039 0.8315 22 1 -0.3633 0.4181 -0.9388 23 1 1.6635 1.8874 -0.8999 24 1 1.6345 1.8986 0.8821 25 1 3.8542 0.5896 0.7739 26 1 3.9279 2.2958 0.2637 27 1 5.0908 0.7037 -1.3263 28 1 3.7943 1.6589 -2.0842 29 1 -1.2022 -0.0870 -4.5304 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260985240.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:10 Heat of formation + Delta-G solvation = 15.800354 kcal Electronic energy + Delta-G solvation = -11223.585881 eV Core-core repulsion = 9339.770738 eV Total energy + Delta-G solvation = -1883.815143 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.86723 -33.60779 -32.53833 -31.44417 -26.43987 -25.55032 -22.91918 -22.16081 -19.55502 -17.85820 -16.57734 -15.03535 -14.63895 -14.34013 -13.59478 -13.38664 -12.62594 -12.39563 -11.70468 -11.63083 -11.38312 -11.02128 -10.88104 -10.63938 -10.44383 -10.29845 -9.79527 -9.42307 -9.13347 -8.60874 -8.32459 -7.17273 -6.09861 -4.06687 3.25779 3.34076 3.38435 4.36994 4.72565 5.00464 5.34423 5.49913 5.57959 5.83540 6.03225 6.13738 6.19598 6.31952 6.39216 6.44205 6.48500 6.59837 6.69963 6.77614 6.85234 6.95188 7.21637 7.60377 7.84241 7.94953 8.06275 8.46146 8.92438 9.51039 11.00230 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.056022 B = 0.013466 C = 0.011923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.684591 B = 2078.855515 C = 2347.883315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.518 5.518 3 C 0.056 3.944 4 C -0.113 4.113 5 C -0.084 4.084 6 C -0.189 4.189 7 H 0.087 0.913 8 C 0.012 3.988 9 H 0.075 0.925 10 C -0.492 4.492 11 H 0.059 0.941 12 C 0.066 3.934 13 N -0.886 5.886 14 Si 0.895 3.105 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.003 3.997 19 H 0.099 0.901 20 H 0.059 0.941 21 H 0.049 0.951 22 H 0.043 0.957 23 H 0.035 0.965 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.349 1.977 5.438 6.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.241 5.241 3 C -0.073 4.073 4 C -0.151 4.151 5 C -0.122 4.122 6 C -0.208 4.208 7 H 0.106 0.894 8 C -0.009 4.009 9 H 0.092 0.908 10 C -0.530 4.530 11 H 0.077 0.923 12 C -0.137 4.137 13 N -0.524 5.524 14 Si 0.722 3.278 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.107 4.107 19 H 0.116 0.884 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.312 1.834 5.816 6.940 hybrid contribution -0.544 -0.287 -1.468 1.592 sum 2.768 1.547 4.348 5.381 Atomic orbital electron populations 1.22181 0.87698 1.01355 1.00265 1.61346 1.07245 1.11833 1.43635 1.22013 0.95067 0.90399 0.99778 1.21610 0.95278 1.00240 0.97994 1.21066 0.98431 0.96747 0.95933 1.22564 0.91633 0.98204 1.08428 0.89439 1.20490 0.91863 0.98254 0.90248 0.90754 1.20724 1.03070 1.14350 1.14840 0.92295 1.25024 0.96112 0.95463 0.97085 1.69963 1.09195 1.32478 1.40745 0.86490 0.78344 0.81046 0.81875 1.19618 1.20890 1.20912 1.22482 0.99617 0.96756 0.91797 0.88363 0.92255 0.93258 0.93841 0.94677 0.92012 0.91446 0.92561 0.92928 0.92563 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.59 60.07 0.58 1.24 15 2 N -0.52 -10.78 4.95 -236.61 -1.17 -11.95 15 3 C 0.06 1.04 5.24 -3.80 -0.02 1.02 15 4 C -0.11 -1.91 6.06 -26.53 -0.16 -2.07 15 5 C -0.08 -1.56 5.91 -26.72 -0.16 -1.72 15 6 C -0.19 -4.17 5.95 -90.74 -0.54 -4.71 15 7 H 0.09 1.91 8.14 -51.93 -0.42 1.49 15 8 C 0.01 0.30 4.74 -91.80 -0.44 -0.13 15 9 H 0.07 2.10 6.91 -51.93 -0.36 1.74 15 10 C -0.49 -13.76 9.21 -34.44 -0.32 -14.08 15 11 H 0.06 1.63 7.81 -52.49 -0.41 1.22 15 12 C 0.07 1.84 5.46 -17.82 -0.10 1.74 15 13 N -0.89 -25.66 13.13 55.43 0.73 -24.94 15 14 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 15 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 15 18 C 0.00 0.06 5.34 -69.00 -0.37 -0.31 15 19 H 0.10 2.38 8.14 -51.93 -0.42 1.95 15 20 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 21 H 0.05 0.84 8.12 -51.93 -0.42 0.42 15 22 H 0.04 1.00 8.14 -51.93 -0.42 0.57 15 23 H 0.03 0.72 6.96 -51.93 -0.36 0.36 15 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 25 H 0.07 1.14 8.14 -51.93 -0.42 0.71 15 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 28 H 0.06 1.07 8.07 -51.93 -0.42 0.65 15 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 LS Contribution 237.75 15.07 3.58 3.58 Total: -1.00 -28.60 237.75 -7.89 -36.49 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.49 Total: -0.42 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -1.52 Total: -19.02 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.44 Total: -36.89 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.60 -7.89 -36.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260985240.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.291 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds