Wall clock time and date at job start Mon Mar 30 2020 02:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 13 13 H 1.09005 * 115.56193 * 325.75399 * 12 2 1 14 14 C 1.53157 * 117.51725 * 111.57164 * 12 2 1 15 15 C 1.52334 * 117.52107 * 179.97438 * 12 2 1 16 16 C 1.53293 * 128.80593 * 134.68535 * 15 12 2 17 17 N 1.48101 * 85.92183 * 196.85819 * 16 15 12 18 18 C 1.48095 * 90.96210 * 24.14787 * 17 16 15 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 22 22 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 23 23 H 1.08997 * 117.51976 * 214.87836 * 14 12 2 24 24 H 1.08995 * 117.51584 * 0.02562 * 14 12 2 25 25 H 1.09000 * 113.79440 * 311.11117 * 16 15 12 26 26 H 1.08998 * 113.79923 * 82.60254 * 16 15 12 27 27 H 1.00906 * 110.99569 * 137.12727 * 17 16 15 28 28 H 1.09001 * 113.80098 * 221.59937 * 18 17 16 29 29 H 1.09007 * 113.80078 * 90.10175 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8258 -2.5201 4.0078 12 6 2.0400 -0.7212 -1.2491 13 1 1.4305 -1.5577 -1.5911 14 6 2.7468 0.1223 -2.3143 15 6 3.5484 -0.8273 -1.4341 16 6 4.3824 -2.0458 -1.8462 17 7 5.5456 -1.2947 -1.3207 18 6 4.6641 -0.4998 -0.4352 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 0.7082 1.1610 3.4844 23 1 2.6020 -0.1590 -3.3573 24 1 2.8485 1.1908 -2.1246 25 1 4.1503 -2.9488 -1.2816 26 1 4.4160 -2.2120 -2.9229 27 1 6.1512 -1.8963 -0.7825 28 1 4.9209 0.5588 -0.3941 29 1 4.5160 -0.9419 0.5501 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260986437.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:51 Heat of formation + Delta-G solvation = 49.238943 kcal Electronic energy + Delta-G solvation = -11122.196874 eV Core-core repulsion = 9239.831736 eV Total energy + Delta-G solvation = -1882.365137 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.22199 -35.13087 -32.74007 -29.68530 -25.64495 -25.00987 -23.99481 -22.15166 -19.35628 -17.67576 -16.30245 -15.63056 -14.73138 -14.45027 -13.84497 -12.79689 -12.60493 -12.35827 -11.67966 -11.38542 -11.20832 -10.88104 -10.77869 -10.42132 -10.11651 -10.05671 -9.58430 -9.28573 -9.09018 -8.67330 -8.31203 -8.06855 -5.95978 -4.01053 3.30144 3.35952 3.37364 4.35337 4.46777 4.87167 5.03693 5.33810 5.47912 5.65850 5.93175 6.02495 6.23079 6.32000 6.41186 6.51901 6.60949 6.71598 6.74267 6.88149 6.97329 7.28700 7.40873 7.70859 7.75321 8.02587 8.17086 8.49464 9.00908 9.62041 11.09860 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.040121 B = 0.015875 C = 0.012411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.723269 B = 1763.317391 C = 2255.590799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.071 3.929 3 H 0.027 0.973 4 C -0.500 4.500 5 H 0.053 0.947 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.279 1.279 12 C -0.103 4.103 13 H 0.086 0.914 14 C -0.159 4.159 15 C -0.158 4.158 16 C 0.043 3.957 17 N -0.643 5.643 18 C 0.058 3.942 19 H 0.024 0.976 20 H 0.007 0.993 21 H 0.082 0.918 22 H 0.259 0.741 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.308 0.692 28 H 0.077 0.923 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 -3.378 -5.193 7.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.053 3.947 3 H 0.045 0.955 4 C -0.538 4.538 5 H 0.072 0.928 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.204 1.204 12 C -0.122 4.122 13 H 0.104 0.896 14 C -0.196 4.196 15 C -0.159 4.159 16 C -0.087 4.087 17 N -0.267 5.267 18 C -0.071 4.071 19 H 0.043 0.957 20 H 0.026 0.974 21 H 0.100 0.900 22 H 0.069 0.931 23 H 0.099 0.901 24 H 0.108 0.892 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.120 0.880 28 H 0.096 0.904 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.923 -2.731 -5.675 7.420 hybrid contribution 0.006 -1.122 1.613 1.965 sum 3.930 -3.853 -4.061 6.840 Atomic orbital electron populations 1.21775 0.98627 0.98835 1.00004 1.18288 0.92268 0.94976 0.89162 0.95531 1.21070 1.30568 1.11971 0.90223 0.92844 1.24955 0.95309 0.95054 0.98788 1.69872 1.36905 1.23015 1.23259 0.86760 0.79126 0.79834 0.82863 1.20413 1.21333 1.20438 1.22600 0.91602 0.99972 0.97985 0.89611 1.22837 1.04419 0.96989 0.95325 1.22375 0.93955 0.98251 1.01311 1.23187 0.90298 0.95049 1.00175 1.66905 1.11973 1.19100 1.28713 1.23190 0.89198 0.99351 0.95357 0.95715 0.97391 0.89981 0.93056 0.90126 0.89233 0.91839 0.90601 0.88027 0.90438 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.95 37.16 0.33 -2.93 15 2 C 0.07 1.76 2.36 -91.78 -0.22 1.54 15 3 H 0.03 0.72 7.90 -51.93 -0.41 0.31 15 4 C -0.50 -13.25 7.07 -34.44 -0.24 -13.49 15 5 H 0.05 1.40 6.69 -52.48 -0.35 1.05 15 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 15 7 N -0.89 -25.31 11.32 55.43 0.63 -24.69 15 8 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 15 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 12 C -0.10 -2.15 5.11 -90.88 -0.46 -2.62 15 13 H 0.09 1.74 8.11 -51.93 -0.42 1.32 15 14 C -0.16 -2.95 10.17 -27.01 -0.27 -3.23 15 15 C -0.16 -3.05 2.82 -155.00 -0.44 -3.49 15 16 C 0.04 0.71 8.92 -3.01 -0.03 0.69 15 17 N -0.64 -10.89 8.53 -119.98 -1.02 -11.91 15 18 C 0.06 1.12 8.03 -3.02 -0.02 1.10 15 19 H 0.02 0.57 8.14 -51.93 -0.42 0.14 15 20 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 15 21 H 0.08 2.19 6.07 -51.93 -0.32 1.87 15 22 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 23 H 0.08 1.32 8.14 -51.93 -0.42 0.90 15 24 H 0.09 1.69 8.05 -51.93 -0.42 1.27 15 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 26 H 0.08 1.16 8.14 -51.93 -0.42 0.73 15 27 H 0.31 4.57 8.92 -39.29 -0.35 4.22 15 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 15 29 H 0.08 1.74 6.55 -51.93 -0.34 1.40 15 LS Contribution 238.90 15.07 3.60 3.60 Total: -1.00 -27.67 238.90 -7.54 -35.21 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -4.28 Total: 2.67 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -1.45 Total: -20.90 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.40 Total: -36.60 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.67 -7.54 -35.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986437.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.453 kcal (2) G-P(sol) polarization free energy of solvation -27.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds