Wall clock time and date at job start Mon Mar 30 2020 02:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 13 13 H 1.09005 * 115.56193 * 325.75399 * 12 2 1 14 14 C 1.53157 * 117.51725 * 111.57164 * 12 2 1 15 15 C 1.52334 * 117.52107 * 179.97438 * 12 2 1 16 16 C 1.53293 * 128.80593 * 134.68535 * 15 12 2 17 17 N 1.48101 * 85.92183 * 196.85819 * 16 15 12 18 18 C 1.48095 * 90.96210 * 24.14787 * 17 16 15 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 22 22 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 23 23 H 1.08997 * 117.51976 * 214.87836 * 14 12 2 24 24 H 1.08995 * 117.51584 * 0.02562 * 14 12 2 25 25 H 1.09000 * 113.79440 * 311.11117 * 16 15 12 26 26 H 1.08998 * 113.79923 * 82.60254 * 16 15 12 27 27 H 1.00906 * 110.99569 * 137.12727 * 17 16 15 28 28 H 1.09001 * 113.80098 * 221.59937 * 18 17 16 29 29 H 1.09007 * 113.80078 * 90.10175 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8258 -2.5201 4.0078 12 6 2.0400 -0.7212 -1.2491 13 1 1.4305 -1.5577 -1.5911 14 6 2.7468 0.1223 -2.3143 15 6 3.5484 -0.8273 -1.4341 16 6 4.3824 -2.0458 -1.8462 17 7 5.5456 -1.2947 -1.3207 18 6 4.6641 -0.4998 -0.4352 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 0.7082 1.1610 3.4844 23 1 2.6020 -0.1590 -3.3573 24 1 2.8485 1.1908 -2.1246 25 1 4.1503 -2.9488 -1.2816 26 1 4.4160 -2.2120 -2.9229 27 1 6.1512 -1.8963 -0.7825 28 1 4.9209 0.5588 -0.3941 29 1 4.5160 -0.9419 0.5501 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260986437.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:51 Heat of formation + Delta-G solvation = 31.171097 kcal Electronic energy + Delta-G solvation = -11122.980354 eV Core-core repulsion = 9239.831736 eV Total energy + Delta-G solvation = -1883.148618 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.70632 -36.84525 -34.60694 -31.61117 -27.38512 -26.71632 -25.47448 -23.93576 -21.11054 -19.17164 -18.31364 -17.16815 -16.63040 -15.87691 -15.48828 -14.69356 -14.22241 -13.96801 -13.36111 -13.12538 -12.88683 -12.76746 -12.65007 -12.27580 -12.07396 -11.60116 -11.28808 -11.07380 -10.72159 -10.42861 -10.35961 -9.58162 -8.03396 -6.14343 1.41618 1.42286 1.49155 2.44191 2.92313 3.23385 3.42974 3.56322 4.00491 4.17711 4.51513 4.68839 4.73837 4.79195 4.87598 4.96357 5.00830 5.10564 5.13966 5.22185 5.25501 5.43843 5.48426 5.66225 6.02130 6.16554 6.41229 6.44800 6.94925 7.51745 9.01349 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.040121 B = 0.015875 C = 0.012411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.723269 B = 1763.317391 C = 2255.590799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.071 3.929 3 H -0.007 1.007 4 C -0.503 4.503 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.945 3.055 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.273 1.273 12 C -0.121 4.121 13 H 0.095 0.905 14 C -0.143 4.143 15 C -0.167 4.167 16 C 0.053 3.947 17 N -0.637 5.637 18 C 0.054 3.946 19 H 0.028 0.972 20 H 0.027 0.973 21 H 0.053 0.947 22 H 0.258 0.742 23 H 0.111 0.889 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.323 0.677 28 H 0.066 0.934 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.549 -4.684 -6.142 8.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.052 3.948 3 H 0.011 0.989 4 C -0.542 4.542 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.771 3.229 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.198 1.198 12 C -0.140 4.140 13 H 0.113 0.887 14 C -0.180 4.180 15 C -0.167 4.167 16 C -0.076 4.076 17 N -0.262 5.262 18 C -0.076 4.076 19 H 0.047 0.953 20 H 0.046 0.954 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.129 0.871 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.116 0.884 27 H 0.136 0.864 28 H 0.084 0.916 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.765 -4.052 -6.632 9.116 hybrid contribution -0.245 -0.692 1.882 2.020 sum 4.520 -4.744 -4.749 8.093 Atomic orbital electron populations 1.21643 0.98498 0.98830 0.99546 1.18181 0.92426 0.93394 0.90775 0.98922 1.21356 1.29972 1.11752 0.91094 0.92797 1.25690 0.95699 0.95790 1.01674 1.70016 1.38191 1.24415 1.23620 0.85817 0.78824 0.78823 0.79432 1.19691 1.21439 1.19826 1.22358 0.93119 1.00985 0.97520 0.88662 1.22871 1.02483 0.96314 0.96290 1.22614 0.92771 0.99882 1.01477 1.23235 0.88716 0.94050 1.01632 1.66854 1.11926 1.19462 1.27996 1.23056 0.90498 0.99004 0.95034 0.95329 0.95424 0.92827 0.93311 0.87081 0.90135 0.90952 0.88373 0.86428 0.91580 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.19 8.95 71.98 0.64 -5.54 15 2 C 0.07 3.50 2.36 -11.54 -0.03 3.48 15 3 H -0.01 -0.41 7.90 -2.39 -0.02 -0.43 15 4 C -0.50 -26.76 7.07 25.60 0.18 -26.57 15 5 H 0.05 2.80 6.69 -2.91 -0.02 2.78 15 6 C 0.01 0.50 5.30 84.66 0.45 0.95 15 7 N -0.92 -53.38 11.32 21.45 0.24 -53.14 15 8 Si 0.94 43.21 29.54 68.60 2.03 45.24 15 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 10 H -0.29 -13.16 7.11 99.48 0.71 -12.45 15 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 12 C -0.12 -4.91 5.11 -10.96 -0.06 -4.96 15 13 H 0.10 3.66 8.11 -2.38 -0.02 3.64 15 14 C -0.14 -5.00 10.17 30.41 0.31 -4.69 15 15 C -0.17 -6.10 2.82 -52.41 -0.15 -6.25 15 16 C 0.05 1.60 8.92 86.17 0.77 2.37 15 17 N -0.64 -19.98 8.53 -533.50 -4.55 -24.53 15 18 C 0.05 2.03 8.03 86.17 0.69 2.72 15 19 H 0.03 1.31 8.14 -2.39 -0.02 1.29 15 20 H 0.03 1.18 8.14 -2.39 -0.02 1.16 15 21 H 0.05 2.90 6.07 -2.38 -0.01 2.89 15 22 H 0.26 14.34 8.31 -92.70 -0.77 13.57 15 23 H 0.11 3.22 8.14 -2.39 -0.02 3.20 15 24 H 0.08 2.96 8.05 -2.39 -0.02 2.94 15 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 15 26 H 0.10 2.55 8.14 -2.39 -0.02 2.53 15 27 H 0.32 8.73 8.92 -89.69 -0.80 7.93 15 28 H 0.07 2.60 8.14 -2.39 -0.02 2.58 15 29 H 0.07 2.70 6.55 -2.38 -0.02 2.69 15 Total: -1.00 -58.21 238.90 0.86 -57.35 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.33 Total: 13.59 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 2.81 Total: -38.52 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -4.31 Total: -77.66 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -58.21 0.86 -57.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986437.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.523 kcal (2) G-P(sol) polarization free energy of solvation -58.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds