Wall clock time and date at job start Mon Mar 30 2020 02:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47175 * 2 1 4 4 C 1.50699 * 109.47025 * 240.00680 * 2 1 3 5 5 H 1.08006 * 119.99640 * 274.93571 * 4 2 1 6 6 C 1.37879 * 120.00319 * 94.94604 * 4 2 1 7 7 N 1.31516 * 119.99879 * 184.91596 * 6 4 2 8 8 Si 1.86799 * 120.00086 * 4.90205 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.83083 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.83377 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.83552 * 8 6 4 12 12 C 1.52994 * 109.47467 * 120.00265 * 2 1 3 13 13 H 1.09006 * 115.56072 * 34.41752 * 12 2 1 14 14 C 1.53152 * 117.52091 * 248.67019 * 12 2 1 15 15 C 1.52330 * 117.51953 * 180.16771 * 12 2 1 16 16 C 1.53293 * 128.80446 * 349.56408 * 15 12 2 17 17 N 1.48096 * 85.92301 * 196.85377 * 16 15 12 18 18 C 1.48102 * 90.96192 * 24.15112 * 17 16 15 19 19 H 1.08994 * 109.47011 * 175.02724 * 1 2 3 20 20 H 1.08998 * 109.46914 * 55.02362 * 1 2 3 21 21 H 1.08996 * 109.46731 * 295.02735 * 1 2 3 22 22 H 0.96997 * 119.99729 * 179.97438 * 7 6 4 23 23 H 1.09008 * 117.51305 * 359.97438 * 14 12 2 24 24 H 1.08991 * 117.52374 * 145.12096 * 14 12 2 25 25 H 1.09002 * 113.79562 * 311.10897 * 16 15 12 26 26 H 1.08996 * 113.79858 * 82.59915 * 16 15 12 27 27 H 1.00909 * 110.99960 * 137.12490 * 17 16 15 28 28 H 1.09000 * 113.79961 * 221.59786 * 18 17 16 29 29 H 1.09000 * 113.80048 * 90.09813 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1364 -1.7853 -1.2288 6 6 2.3592 0.0122 -2.3585 7 7 2.7048 -0.6131 -3.4626 8 14 2.3108 1.8791 -2.3184 9 1 3.5960 2.3963 -1.7837 10 1 2.1020 2.3985 -3.6938 11 1 1.1957 2.3268 -1.4457 12 6 2.0401 -0.7213 1.2491 13 1 1.4321 -1.5596 1.5894 14 6 2.7418 0.1231 2.3169 15 6 3.5484 -0.8244 1.4357 16 6 4.6646 -0.4937 0.4384 17 7 5.5467 -1.2876 1.3243 18 6 4.3844 -2.0415 1.8477 19 1 -0.3633 -1.0237 -0.0891 20 1 -0.3633 0.5891 -0.8420 21 1 -0.3633 0.4347 0.9312 22 1 2.9344 -0.1048 -4.2562 23 1 2.8402 1.1924 2.1290 24 1 2.5960 -0.1602 3.3592 25 1 4.5186 -0.9353 -0.5474 26 1 4.9192 0.5653 0.3986 27 1 6.1542 -1.8875 0.7863 28 1 4.4171 -2.2086 2.9243 29 1 4.1549 -2.9446 1.2821 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260986438.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:54 Heat of formation + Delta-G solvation = 49.302199 kcal Electronic energy + Delta-G solvation = -11215.484794 eV Core-core repulsion = 9333.122400 eV Total energy + Delta-G solvation = -1882.362394 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.20961 -35.22016 -32.59075 -30.53292 -25.59524 -25.01771 -24.00567 -22.19579 -19.30812 -17.63528 -16.85791 -15.76204 -14.58909 -14.44330 -13.76871 -12.93662 -12.56679 -12.46362 -11.99177 -11.63815 -11.41908 -11.12455 -10.92074 -10.63803 -10.03686 -9.91165 -9.62135 -9.29929 -9.25304 -8.81738 -8.46446 -8.09890 -6.06801 -4.02868 3.28295 3.37429 3.39573 4.37352 4.42935 4.88172 5.00750 5.26467 5.46974 5.59095 5.98747 6.04957 6.17956 6.21814 6.37882 6.43396 6.50111 6.55165 6.60041 6.69152 6.84830 6.91745 7.01244 7.23273 7.52537 7.77619 7.80049 8.55472 8.98237 9.57126 11.06506 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.038775 B = 0.017687 C = 0.014975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.949928 B = 1582.659454 C = 1869.331081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.035 3.965 3 H 0.030 0.970 4 C -0.495 4.495 5 H 0.071 0.929 6 C 0.071 3.929 7 N -0.904 5.904 8 Si 0.869 3.131 9 H -0.276 1.276 10 H -0.291 1.291 11 H -0.265 1.265 12 C -0.100 4.100 13 H 0.089 0.911 14 C -0.163 4.163 15 C -0.151 4.151 16 C 0.057 3.943 17 N -0.644 5.644 18 C 0.045 3.955 19 H 0.044 0.956 20 H 0.041 0.959 21 H 0.022 0.978 22 H 0.262 0.738 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.310 0.690 28 H 0.075 0.925 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.798 0.472 8.026 8.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.016 3.984 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.089 0.911 6 C -0.130 4.130 7 N -0.542 5.542 8 Si 0.697 3.303 9 H -0.202 1.202 10 H -0.217 1.217 11 H -0.190 1.190 12 C -0.119 4.119 13 H 0.107 0.893 14 C -0.200 4.200 15 C -0.151 4.151 16 C -0.072 4.072 17 N -0.268 5.268 18 C -0.085 4.085 19 H 0.064 0.936 20 H 0.060 0.940 21 H 0.042 0.958 22 H 0.072 0.928 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.113 0.887 26 H 0.090 0.910 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.141 1.027 8.454 8.592 hybrid contribution -0.272 0.387 -0.868 0.989 sum 0.869 1.414 7.585 7.765 Atomic orbital electron populations 1.21947 0.98799 1.00261 0.98225 1.18799 0.92093 0.95248 0.92283 0.95146 1.20863 1.42619 0.95233 0.94625 0.91097 1.24998 0.94932 0.97774 0.95310 1.69902 1.47086 1.35581 1.01638 0.86979 0.79155 0.87171 0.77004 1.20162 1.21740 1.19014 1.22389 0.92519 1.00036 0.96961 0.89264 1.22908 1.04731 0.96873 0.95493 1.22388 0.93567 0.98235 1.00926 1.23215 0.88904 0.99097 0.96019 1.66890 1.11898 1.19140 1.28878 1.23160 0.90258 0.95019 1.00045 0.93643 0.94036 0.95843 0.92789 0.89468 0.89885 0.88748 0.90990 0.87819 0.90666 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.16 37.16 0.34 -2.49 15 2 C 0.03 0.79 2.02 -91.77 -0.19 0.61 15 3 H 0.03 0.72 5.06 -51.92 -0.26 0.46 15 4 C -0.50 -13.20 6.89 -34.44 -0.24 -13.44 15 5 H 0.07 2.08 8.06 -52.48 -0.42 1.66 15 6 C 0.07 1.96 5.47 -17.82 -0.10 1.87 15 7 N -0.90 -26.83 13.96 55.43 0.77 -26.05 15 8 Si 0.87 21.30 26.99 -169.99 -4.59 16.71 15 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 11 H -0.27 -6.29 6.82 56.52 0.39 -5.90 15 12 C -0.10 -2.00 5.14 -90.89 -0.47 -2.47 15 13 H 0.09 1.70 8.11 -51.93 -0.42 1.28 15 14 C -0.16 -2.92 10.18 -26.92 -0.27 -3.19 15 15 C -0.15 -2.91 2.91 -154.91 -0.45 -3.36 15 16 C 0.06 1.15 8.08 -3.02 -0.02 1.13 15 17 N -0.64 -11.38 8.53 -119.98 -1.02 -12.41 15 18 C 0.05 0.77 8.92 -3.01 -0.03 0.74 15 19 H 0.04 0.93 8.14 -51.93 -0.42 0.51 15 20 H 0.04 0.89 8.14 -51.93 -0.42 0.47 15 21 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 23 H 0.09 1.57 8.05 -51.92 -0.42 1.15 15 24 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.09 2.16 7.09 -51.93 -0.37 1.79 15 26 H 0.07 1.49 8.14 -51.93 -0.42 1.07 15 27 H 0.31 4.93 8.92 -39.29 -0.35 4.58 15 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 LS Contribution 239.87 15.07 3.61 3.61 Total: -1.00 -28.37 239.87 -7.00 -35.37 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.35 Total: 3.37 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -1.42 Total: -20.61 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: -0.25 Total: -38.46 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.59 Total: 16.71 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.37 -7.00 -35.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986438.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.674 kcal (2) G-P(sol) polarization free energy of solvation -28.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds