Wall clock time and date at job start Mon Mar 30 2020 02:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47175 * 2 1 4 4 C 1.50699 * 109.47025 * 240.00680 * 2 1 3 5 5 H 1.08006 * 119.99640 * 274.93571 * 4 2 1 6 6 C 1.37879 * 120.00319 * 94.94604 * 4 2 1 7 7 N 1.31516 * 119.99879 * 184.91596 * 6 4 2 8 8 Si 1.86799 * 120.00086 * 4.90205 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.83083 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.83377 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.83552 * 8 6 4 12 12 C 1.52994 * 109.47467 * 120.00265 * 2 1 3 13 13 H 1.09006 * 115.56072 * 34.41752 * 12 2 1 14 14 C 1.53152 * 117.52091 * 248.67019 * 12 2 1 15 15 C 1.52330 * 117.51953 * 180.16771 * 12 2 1 16 16 C 1.53293 * 128.80446 * 349.56408 * 15 12 2 17 17 N 1.48096 * 85.92301 * 196.85377 * 16 15 12 18 18 C 1.48102 * 90.96192 * 24.15112 * 17 16 15 19 19 H 1.08994 * 109.47011 * 175.02724 * 1 2 3 20 20 H 1.08998 * 109.46914 * 55.02362 * 1 2 3 21 21 H 1.08996 * 109.46731 * 295.02735 * 1 2 3 22 22 H 0.96997 * 119.99729 * 179.97438 * 7 6 4 23 23 H 1.09008 * 117.51305 * 359.97438 * 14 12 2 24 24 H 1.08991 * 117.52374 * 145.12096 * 14 12 2 25 25 H 1.09002 * 113.79562 * 311.10897 * 16 15 12 26 26 H 1.08996 * 113.79858 * 82.59915 * 16 15 12 27 27 H 1.00909 * 110.99960 * 137.12490 * 17 16 15 28 28 H 1.09000 * 113.79961 * 221.59786 * 18 17 16 29 29 H 1.09000 * 113.80048 * 90.09813 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1364 -1.7853 -1.2288 6 6 2.3592 0.0122 -2.3585 7 7 2.7048 -0.6131 -3.4626 8 14 2.3108 1.8791 -2.3184 9 1 3.5960 2.3963 -1.7837 10 1 2.1020 2.3985 -3.6938 11 1 1.1957 2.3268 -1.4457 12 6 2.0401 -0.7213 1.2491 13 1 1.4321 -1.5596 1.5894 14 6 2.7418 0.1231 2.3169 15 6 3.5484 -0.8244 1.4357 16 6 4.6646 -0.4937 0.4384 17 7 5.5467 -1.2876 1.3243 18 6 4.3844 -2.0415 1.8477 19 1 -0.3633 -1.0237 -0.0891 20 1 -0.3633 0.5891 -0.8420 21 1 -0.3633 0.4347 0.9312 22 1 2.9344 -0.1048 -4.2562 23 1 2.8402 1.1924 2.1290 24 1 2.5960 -0.1602 3.3592 25 1 4.5186 -0.9353 -0.5474 26 1 4.9192 0.5653 0.3986 27 1 6.1542 -1.8875 0.7863 28 1 4.4171 -2.2086 2.9243 29 1 4.1549 -2.9446 1.2821 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260986438.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:54 Heat of formation + Delta-G solvation = 29.634488 kcal Electronic energy + Delta-G solvation = -11216.337650 eV Core-core repulsion = 9333.122400 eV Total energy + Delta-G solvation = -1883.215250 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.70689 -36.87905 -34.53015 -32.35147 -27.33986 -26.72843 -25.49301 -23.86379 -20.99634 -19.16722 -18.95159 -17.29398 -16.41789 -15.89962 -15.49007 -14.73307 -14.49065 -14.01637 -13.69066 -13.22263 -12.98744 -12.90397 -12.70541 -12.42313 -11.80159 -11.58286 -11.40136 -11.04835 -10.87890 -10.65977 -10.37012 -9.62194 -8.22713 -6.20691 1.33315 1.36266 1.44689 2.37539 2.89764 3.14672 3.42329 3.52783 3.98139 4.12532 4.53641 4.57088 4.67925 4.71422 4.78261 4.89462 4.93072 5.01386 5.11919 5.17038 5.19600 5.28751 5.40186 5.45156 5.76607 5.81476 6.36711 6.40624 6.82672 7.41698 8.94253 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.038775 B = 0.017687 C = 0.014975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.949928 B = 1582.659454 C = 1869.331081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.031 3.969 3 H 0.026 0.974 4 C -0.481 4.481 5 H 0.030 0.970 6 C 0.017 3.983 7 N -0.952 5.952 8 Si 0.923 3.077 9 H -0.270 1.270 10 H -0.294 1.294 11 H -0.247 1.247 12 C -0.118 4.118 13 H 0.100 0.900 14 C -0.136 4.136 15 C -0.169 4.169 16 C 0.053 3.947 17 N -0.637 5.637 18 C 0.054 3.946 19 H 0.043 0.957 20 H 0.030 0.970 21 H 0.056 0.944 22 H 0.261 0.739 23 H 0.088 0.912 24 H 0.116 0.884 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.320 0.680 28 H 0.102 0.898 29 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.449 1.381 10.388 10.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.012 3.988 3 H 0.044 0.956 4 C -0.519 4.519 5 H 0.049 0.951 6 C -0.179 4.179 7 N -0.594 5.594 8 Si 0.749 3.251 9 H -0.195 1.195 10 H -0.221 1.221 11 H -0.171 1.171 12 C -0.137 4.137 13 H 0.118 0.882 14 C -0.172 4.172 15 C -0.169 4.169 16 C -0.077 4.077 17 N -0.261 5.261 18 C -0.076 4.076 19 H 0.062 0.938 20 H 0.049 0.951 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.106 0.894 24 H 0.134 0.866 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.132 0.868 28 H 0.120 0.880 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.785 1.934 10.842 11.041 hybrid contribution -0.149 0.012 -1.585 1.592 sum 0.637 1.946 9.257 9.481 Atomic orbital electron populations 1.21856 0.97154 1.00375 0.99515 1.18788 0.93401 0.94708 0.91891 0.95585 1.21024 1.41181 0.93503 0.96213 0.95134 1.25701 0.95145 1.02072 0.94986 1.70045 1.49502 1.37291 1.02521 0.86093 0.79889 0.82069 0.77084 1.19534 1.22059 1.17069 1.22261 0.93200 1.01229 0.96965 0.88237 1.22983 1.01442 0.96439 0.96370 1.22601 0.92917 0.99975 1.01425 1.22985 0.90976 0.98694 0.95062 1.66862 1.11869 1.19458 1.27928 1.23191 0.88876 0.94000 1.01537 0.93791 0.95117 0.92544 0.93001 0.89399 0.86614 0.92442 0.91744 0.86757 0.87971 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.24 9.16 71.98 0.66 -4.58 15 2 C 0.03 1.37 2.02 -11.54 -0.02 1.35 15 3 H 0.03 1.18 5.06 -2.38 -0.01 1.16 15 4 C -0.48 -26.05 6.89 25.60 0.18 -25.87 15 5 H 0.03 1.86 8.06 -2.91 -0.02 1.84 15 6 C 0.02 0.96 5.47 84.65 0.46 1.42 15 7 N -0.95 -58.45 13.96 21.45 0.30 -58.15 15 8 Si 0.92 43.88 26.99 68.60 1.85 45.73 15 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 15 10 H -0.29 -14.03 7.11 99.48 0.71 -13.33 15 11 H -0.25 -10.92 6.82 99.48 0.68 -10.24 15 12 C -0.12 -4.44 5.14 -10.97 -0.06 -4.50 15 13 H 0.10 3.53 8.11 -2.38 -0.02 3.52 15 14 C -0.14 -4.32 10.18 30.47 0.31 -4.01 15 15 C -0.17 -6.16 2.91 -52.35 -0.15 -6.31 15 16 C 0.05 2.12 8.08 86.17 0.70 2.82 15 17 N -0.64 -21.48 8.53 -533.50 -4.55 -26.03 15 18 C 0.05 1.69 8.92 86.17 0.77 2.46 15 19 H 0.04 1.73 8.14 -2.39 -0.02 1.71 15 20 H 0.03 1.25 8.14 -2.39 -0.02 1.24 15 21 H 0.06 1.88 8.14 -2.39 -0.02 1.86 15 22 H 0.26 15.24 8.31 -92.71 -0.77 14.47 15 23 H 0.09 2.81 8.05 -2.38 -0.02 2.79 15 24 H 0.12 2.97 8.14 -2.39 -0.02 2.95 15 25 H 0.06 2.73 7.09 -2.39 -0.02 2.71 15 26 H 0.06 2.64 8.14 -2.39 -0.02 2.62 15 27 H 0.32 9.84 8.92 -89.69 -0.80 9.04 15 28 H 0.10 2.71 8.14 -2.39 -0.02 2.69 15 29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 Total: -1.00 -61.12 239.87 0.74 -60.38 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.30 Total: 15.29 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 2.84 Total: -37.21 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -4.25 Total: -84.18 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.85 Total: 45.73 kcal Total: -61.12 0.74 -60.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986438.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.017 kcal (2) G-P(sol) polarization free energy of solvation -61.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds