Wall clock time and date at job start Mon Mar 30 2020 02:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46809 * 2 1 4 4 C 1.50702 * 109.46890 * 119.99653 * 2 1 3 5 5 H 1.07999 * 119.99728 * 120.01021 * 4 2 1 6 6 C 1.37877 * 119.99916 * 299.99687 * 4 2 1 7 7 N 1.31519 * 119.99630 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00413 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47143 * 89.99001 * 8 6 4 10 10 H 1.48494 * 109.47078 * 209.99593 * 8 6 4 11 11 H 1.48499 * 109.46681 * 329.99553 * 8 6 4 12 12 C 1.53000 * 109.47463 * 239.99822 * 2 1 3 13 13 H 1.09000 * 115.55949 * 321.06712 * 12 2 1 14 14 C 1.53149 * 117.51775 * 175.31517 * 12 2 1 15 15 C 1.52337 * 59.88399 * 252.54141 * 14 12 2 16 16 C 1.53289 * 128.79957 * 242.14857 * 15 14 12 17 17 N 1.48093 * 85.92217 * 196.85616 * 16 15 14 18 18 C 1.48105 * 90.96129 * 24.14992 * 17 16 15 19 19 H 1.09005 * 109.46848 * 64.75578 * 1 2 3 20 20 H 1.09000 * 109.46723 * 184.75610 * 1 2 3 21 21 H 1.08994 * 109.47255 * 304.75615 * 1 2 3 22 22 H 0.97001 * 119.99929 * 180.02562 * 7 6 4 23 23 H 1.09007 * 117.51445 * 359.97438 * 14 12 2 24 24 H 1.08998 * 117.52068 * 145.07480 * 14 12 2 25 25 H 1.09007 * 113.79977 * 311.10496 * 16 15 14 26 26 H 1.08996 * 113.80215 * 82.60452 * 16 15 14 27 27 H 1.00903 * 110.99980 * 271.17107 * 17 16 15 28 28 H 1.08998 * 113.79788 * 221.59878 * 18 17 16 29 29 H 1.08996 * 113.79779 * 90.10687 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1372 -0.8594 3.5566 8 14 0.6248 1.2793 2.6541 9 1 -0.8028 0.8729 2.6996 10 1 0.9759 1.9953 3.9068 11 1 0.8472 2.1766 1.4920 12 6 2.0401 -0.7213 -1.2492 13 1 1.4757 -1.6056 -1.5450 14 6 3.5522 -0.7331 -1.4915 15 6 2.6460 0.1321 -2.3580 16 6 2.4040 0.0557 -3.8698 17 7 1.8444 1.4209 -3.7423 18 6 2.6349 1.6571 -2.5124 19 1 -0.3633 0.4383 -0.9296 20 1 -0.3633 -1.0241 0.0852 21 1 -0.3633 0.5858 0.8443 22 1 1.9026 -0.5282 4.4376 23 1 4.1833 -0.2266 -0.7611 24 1 3.9824 -1.6252 -1.9467 25 1 3.3192 0.0089 -4.4600 26 1 1.6695 -0.6954 -4.1603 27 1 0.8569 1.3893 -3.5371 28 1 2.0832 2.1746 -1.7276 29 1 3.6188 2.0878 -2.6978 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260986439.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:57 Heat of formation + Delta-G solvation = 58.581188 kcal Electronic energy + Delta-G solvation = -11079.501763 eV Core-core repulsion = 9197.541736 eV Total energy + Delta-G solvation = -1881.960027 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.60203 -35.36327 -32.65249 -30.67344 -25.79682 -25.07238 -24.07873 -22.40110 -19.68916 -17.84541 -16.68852 -15.97915 -14.84078 -14.49322 -13.94513 -13.20783 -12.99362 -12.58000 -12.20770 -12.00429 -11.69900 -11.25687 -10.94680 -10.38781 -10.26942 -9.85490 -9.81282 -9.62659 -9.08132 -8.75788 -8.56249 -8.19747 -6.07382 -4.05850 3.26166 3.36083 3.38563 4.25343 4.39435 4.40404 4.74142 5.22618 5.26991 5.53735 5.76756 5.86036 5.97769 5.99912 6.14238 6.18009 6.28332 6.34554 6.41181 6.43530 6.65885 6.76539 6.94381 7.04314 7.49757 7.52152 7.75876 8.53391 8.98117 9.55099 11.05992 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.057486 B = 0.013298 C = 0.012055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.954196 B = 2105.010903 C = 2322.186462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.034 3.966 3 H 0.028 0.972 4 C -0.506 4.506 5 H 0.075 0.925 6 C 0.068 3.932 7 N -0.902 5.902 8 Si 0.889 3.111 9 H -0.280 1.280 10 H -0.298 1.298 11 H -0.268 1.268 12 C -0.075 4.075 13 H 0.092 0.908 14 C -0.154 4.154 15 C -0.226 4.226 16 C 0.055 3.945 17 N -0.659 5.659 18 C 0.056 3.944 19 H 0.027 0.973 20 H 0.052 0.948 21 H 0.037 0.963 22 H 0.263 0.737 23 H 0.098 0.902 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.335 0.665 28 H 0.073 0.927 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.963 2.792 -10.447 10.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.016 3.984 3 H 0.046 0.954 4 C -0.544 4.544 5 H 0.093 0.907 6 C -0.133 4.133 7 N -0.541 5.541 8 Si 0.719 3.281 9 H -0.207 1.207 10 H -0.226 1.226 11 H -0.194 1.194 12 C -0.094 4.094 13 H 0.110 0.890 14 C -0.192 4.192 15 C -0.227 4.227 16 C -0.075 4.075 17 N -0.285 5.285 18 C -0.073 4.073 19 H 0.046 0.954 20 H 0.071 0.929 21 H 0.055 0.945 22 H 0.073 0.927 23 H 0.116 0.884 24 H 0.101 0.899 25 H 0.110 0.890 26 H 0.084 0.916 27 H 0.149 0.851 28 H 0.092 0.908 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.626 3.285 -10.888 11.390 hybrid contribution -0.986 0.089 1.094 1.475 sum -1.612 3.374 -9.794 10.484 Atomic orbital electron populations 1.22136 0.99241 1.00764 0.98100 1.18787 0.91400 0.95917 0.92321 0.95388 1.20976 1.31685 1.13482 0.88280 0.90658 1.25011 0.95787 0.96615 0.95903 1.69898 1.45867 1.40404 0.97895 0.86837 0.80636 0.83878 0.76714 1.20744 1.22590 1.19368 1.22212 0.95147 0.97969 0.94027 0.88984 1.22701 0.94483 1.00497 1.01527 1.24410 1.10199 0.94871 0.93233 1.23159 0.99820 0.91092 0.93397 1.65155 1.08583 1.21698 1.33050 1.23133 0.99032 0.93646 0.91538 0.95437 0.92883 0.94453 0.92709 0.88361 0.89868 0.89012 0.91572 0.85081 0.90829 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.61 37.16 0.32 -2.79 15 2 C 0.03 0.79 1.96 -91.77 -0.18 0.61 15 3 H 0.03 0.67 5.81 -51.93 -0.30 0.37 15 4 C -0.51 -13.99 8.91 -34.44 -0.31 -14.29 15 5 H 0.08 2.26 7.99 -52.49 -0.42 1.84 15 6 C 0.07 1.95 5.45 -17.82 -0.10 1.85 15 7 N -0.90 -27.56 13.96 55.43 0.77 -26.79 15 8 Si 0.89 22.05 24.32 -169.99 -4.13 17.91 15 9 H -0.28 -6.80 6.91 56.52 0.39 -6.41 15 10 H -0.30 -7.43 7.11 56.52 0.40 -7.03 15 11 H -0.27 -6.38 6.53 56.52 0.37 -6.01 15 12 C -0.08 -1.47 5.03 -90.81 -0.46 -1.93 15 13 H 0.09 1.75 8.14 -51.93 -0.42 1.32 15 14 C -0.15 -2.80 9.99 -26.99 -0.27 -3.07 15 15 C -0.23 -3.77 3.05 -154.91 -0.47 -4.24 15 16 C 0.06 0.78 8.92 -3.02 -0.03 0.75 15 17 N -0.66 -9.74 8.55 -120.01 -1.03 -10.76 15 18 C 0.06 0.89 8.58 -3.01 -0.03 0.87 15 19 H 0.03 0.50 8.14 -51.93 -0.42 0.08 15 20 H 0.05 1.12 8.14 -51.93 -0.42 0.70 15 21 H 0.04 0.84 3.40 -51.93 -0.18 0.66 15 22 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 23 H 0.10 1.93 8.14 -51.92 -0.42 1.51 15 24 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 25 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 27 H 0.34 4.71 8.89 -39.29 -0.35 4.36 15 28 H 0.07 1.24 7.14 -51.93 -0.37 0.87 15 29 H 0.09 1.38 8.14 -51.93 -0.42 0.96 15 LS Contribution 234.55 15.07 3.53 3.53 Total: -1.00 -29.23 234.55 -6.55 -35.78 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.18 Total: 2.58 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -1.52 Total: -22.25 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.25 Total: -37.55 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.13 Total: 17.91 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.23 -6.55 -35.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986439.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.360 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds