Wall clock time and date at job start Mon Mar 30 2020 02:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46809 * 2 1 4 4 C 1.50702 * 109.46890 * 119.99653 * 2 1 3 5 5 H 1.07999 * 119.99728 * 120.01021 * 4 2 1 6 6 C 1.37877 * 119.99916 * 299.99687 * 4 2 1 7 7 N 1.31519 * 119.99630 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00413 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47143 * 89.99001 * 8 6 4 10 10 H 1.48494 * 109.47078 * 209.99593 * 8 6 4 11 11 H 1.48499 * 109.46681 * 329.99553 * 8 6 4 12 12 C 1.53000 * 109.47463 * 239.99822 * 2 1 3 13 13 H 1.09000 * 115.55949 * 321.06712 * 12 2 1 14 14 C 1.53149 * 117.51775 * 175.31517 * 12 2 1 15 15 C 1.52337 * 59.88399 * 252.54141 * 14 12 2 16 16 C 1.53289 * 128.79957 * 242.14857 * 15 14 12 17 17 N 1.48093 * 85.92217 * 196.85616 * 16 15 14 18 18 C 1.48105 * 90.96129 * 24.14992 * 17 16 15 19 19 H 1.09005 * 109.46848 * 64.75578 * 1 2 3 20 20 H 1.09000 * 109.46723 * 184.75610 * 1 2 3 21 21 H 1.08994 * 109.47255 * 304.75615 * 1 2 3 22 22 H 0.97001 * 119.99929 * 180.02562 * 7 6 4 23 23 H 1.09007 * 117.51445 * 359.97438 * 14 12 2 24 24 H 1.08998 * 117.52068 * 145.07480 * 14 12 2 25 25 H 1.09007 * 113.79977 * 311.10496 * 16 15 14 26 26 H 1.08996 * 113.80215 * 82.60452 * 16 15 14 27 27 H 1.00903 * 110.99980 * 271.17107 * 17 16 15 28 28 H 1.08998 * 113.79788 * 221.59878 * 18 17 16 29 29 H 1.08996 * 113.79779 * 90.10687 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1372 -0.8594 3.5566 8 14 0.6248 1.2793 2.6541 9 1 -0.8028 0.8729 2.6996 10 1 0.9759 1.9953 3.9068 11 1 0.8472 2.1766 1.4920 12 6 2.0401 -0.7213 -1.2492 13 1 1.4757 -1.6056 -1.5450 14 6 3.5522 -0.7331 -1.4915 15 6 2.6460 0.1321 -2.3580 16 6 2.4040 0.0557 -3.8698 17 7 1.8444 1.4209 -3.7423 18 6 2.6349 1.6571 -2.5124 19 1 -0.3633 0.4383 -0.9296 20 1 -0.3633 -1.0241 0.0852 21 1 -0.3633 0.5858 0.8443 22 1 1.9026 -0.5282 4.4376 23 1 4.1833 -0.2266 -0.7611 24 1 3.9824 -1.6252 -1.9467 25 1 3.3192 0.0089 -4.4600 26 1 1.6695 -0.6954 -4.1603 27 1 0.8569 1.3893 -3.5371 28 1 2.0832 2.1746 -1.7276 29 1 3.6188 2.0878 -2.6978 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260986439.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:57 Heat of formation + Delta-G solvation = 37.360358 kcal Electronic energy + Delta-G solvation = -11080.421967 eV Core-core repulsion = 9197.541736 eV Total energy + Delta-G solvation = -1882.880231 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.92233 -36.97865 -34.54355 -32.52875 -27.09808 -26.95693 -25.41567 -24.02476 -21.35334 -19.31767 -18.61688 -17.28978 -16.77467 -15.89964 -15.49529 -14.91417 -14.52617 -14.15210 -13.99856 -13.37013 -13.10567 -12.99502 -12.81182 -12.19232 -11.78379 -11.60227 -11.50457 -11.19599 -10.90142 -10.69574 -10.37448 -9.43920 -8.28782 -6.31052 1.29185 1.34225 1.44438 2.31936 2.85574 3.06833 3.19029 3.41798 3.90062 4.13011 4.43836 4.51644 4.64965 4.69835 4.73562 4.75857 4.82066 4.95433 5.00445 5.05065 5.12256 5.21345 5.27375 5.36373 5.69536 5.74923 6.33967 6.39611 6.76350 7.33422 8.88315 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.057486 B = 0.013298 C = 0.012055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.954196 B = 2105.010903 C = 2322.186462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 H 0.023 0.977 4 C -0.506 4.506 5 H 0.034 0.966 6 C 0.008 3.992 7 N -0.953 5.953 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.302 1.302 11 H -0.249 1.249 12 C -0.098 4.098 13 H 0.098 0.902 14 C -0.163 4.163 15 C -0.206 4.206 16 C 0.066 3.934 17 N -0.656 5.656 18 C 0.053 3.947 19 H 0.062 0.938 20 H 0.049 0.951 21 H 0.027 0.973 22 H 0.264 0.736 23 H 0.075 0.925 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.083 0.917 27 H 0.341 0.659 28 H 0.064 0.936 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.948 3.977 -12.622 13.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.017 3.983 3 H 0.041 0.959 4 C -0.544 4.544 5 H 0.053 0.947 6 C -0.188 4.188 7 N -0.594 5.594 8 Si 0.778 3.222 9 H -0.195 1.195 10 H -0.230 1.230 11 H -0.173 1.173 12 C -0.116 4.116 13 H 0.116 0.884 14 C -0.201 4.201 15 C -0.207 4.207 16 C -0.064 4.064 17 N -0.282 5.282 18 C -0.077 4.077 19 H 0.081 0.919 20 H 0.068 0.932 21 H 0.046 0.954 22 H 0.073 0.927 23 H 0.093 0.907 24 H 0.118 0.882 25 H 0.127 0.873 26 H 0.101 0.899 27 H 0.155 0.845 28 H 0.082 0.918 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.618 4.471 -13.096 13.932 hybrid contribution -0.604 -0.353 1.745 1.880 sum -2.223 4.118 -11.351 12.278 Atomic orbital electron populations 1.22053 0.97585 1.00829 0.99537 1.18680 0.92710 0.95163 0.91729 0.95934 1.21304 1.30379 1.12218 0.90514 0.94738 1.25871 0.97458 0.99934 0.95557 1.70054 1.48105 1.42660 0.98549 0.85828 0.79152 0.80224 0.77019 1.19457 1.22962 1.17316 1.22043 0.95999 0.99152 0.94375 0.88440 1.22694 0.93576 1.01811 1.02055 1.24535 1.06696 0.95188 0.94301 1.23278 1.00985 0.91100 0.91021 1.65179 1.08939 1.22061 1.32032 1.23225 0.99803 0.92810 0.91868 0.91864 0.93191 0.95399 0.92716 0.90675 0.88153 0.87349 0.89905 0.84456 0.91791 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.79 8.61 71.98 0.62 -5.17 15 2 C 0.04 1.61 1.96 -11.54 -0.02 1.59 15 3 H 0.02 1.04 5.81 -2.38 -0.01 1.03 15 4 C -0.51 -28.54 8.91 25.60 0.23 -28.32 15 5 H 0.03 2.16 7.99 -2.91 -0.02 2.14 15 6 C 0.01 0.47 5.45 84.65 0.46 0.93 15 7 N -0.95 -59.99 13.96 21.45 0.30 -59.69 15 8 Si 0.95 45.26 24.32 68.60 1.67 46.93 15 9 H -0.27 -12.19 6.91 99.48 0.69 -11.50 15 10 H -0.30 -14.42 7.11 99.48 0.71 -13.72 15 11 H -0.25 -10.97 6.53 99.48 0.65 -10.32 15 12 C -0.10 -3.69 5.03 -10.92 -0.05 -3.74 15 13 H 0.10 3.55 8.14 -2.39 -0.02 3.53 15 14 C -0.16 -5.81 9.99 30.42 0.30 -5.50 15 15 C -0.21 -6.33 3.05 -52.35 -0.16 -6.49 15 16 C 0.07 1.59 8.92 86.17 0.77 2.36 15 17 N -0.66 -16.87 8.55 -533.59 -4.56 -21.43 15 18 C 0.05 1.52 8.58 86.16 0.74 2.26 15 19 H 0.06 2.09 8.14 -2.38 -0.02 2.07 15 20 H 0.05 2.02 8.14 -2.39 -0.02 2.00 15 21 H 0.03 1.17 3.40 -2.39 -0.01 1.16 15 22 H 0.26 15.62 8.31 -92.71 -0.77 14.85 15 23 H 0.07 2.99 8.14 -2.38 -0.02 2.97 15 24 H 0.10 3.16 8.14 -2.39 -0.02 3.14 15 25 H 0.11 2.35 8.14 -2.38 -0.02 2.33 15 26 H 0.08 1.79 8.14 -2.39 -0.02 1.77 15 27 H 0.34 8.22 8.89 -89.69 -0.80 7.42 15 28 H 0.06 1.99 7.14 -2.39 -0.02 1.97 15 29 H 0.10 2.79 8.14 -2.39 -0.02 2.77 15 Total: -1.00 -63.22 234.55 0.55 -62.67 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.26 Total: 13.61 kcal Atomic # 6 Polarization: -44.96 SS G_CDS: 2.88 Total: -42.08 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -4.26 Total: -81.12 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.67 Total: 46.93 kcal Total: -63.22 0.55 -62.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986439.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.029 kcal (2) G-P(sol) polarization free energy of solvation -63.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds