Wall clock time and date at job start Mon Mar 30 2020 02:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30963 * 118.94399 * 2 1 4 4 N 1.28455 * 123.18559 * 179.70265 * 3 2 1 5 5 C 1.33646 * 120.58846 * 0.54591 * 4 3 2 6 6 C 1.40105 * 121.04145 * 179.75673 * 5 4 3 7 7 H 1.07997 * 120.00267 * 179.71826 * 6 5 4 8 8 C 1.40503 * 119.99961 * 359.44522 * 6 5 4 9 9 N 1.30537 * 119.99910 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99860 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47351 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47211 * 120.00094 * 10 8 6 13 13 H 1.48506 * 109.46622 * 239.99440 * 10 8 6 14 14 C 1.48076 * 117.91721 * 359.48240 * 5 4 3 15 15 O 1.21580 * 121.36355 * 180.27428 * 14 5 4 16 16 O 1.34023 * 118.94776 * 179.97438 * 2 1 3 17 17 H 1.09000 * 109.46871 * 270.02313 * 1 2 3 18 18 H 1.08999 * 109.47230 * 30.02161 * 1 2 3 19 19 H 1.09000 * 109.47388 * 150.02308 * 1 2 3 20 20 H 0.97000 * 119.99432 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1408 1.1461 0.0000 4 7 3.4218 1.2411 0.0056 5 6 4.1852 0.1441 0.0008 6 6 5.5831 0.2367 0.0018 7 1 6.1838 -0.6608 0.0025 8 6 6.2037 1.4972 -0.0041 9 7 5.4777 2.5821 -0.0108 10 14 8.0676 1.6207 -0.0036 11 1 8.6541 0.2564 0.0041 12 1 8.5160 2.3459 -1.2193 13 1 8.5144 2.3580 1.2056 14 6 3.5071 -1.1724 0.0009 15 8 4.1403 -2.2103 0.0017 16 8 2.1557 -1.1728 0.0005 17 1 -0.3633 0.0004 1.0277 18 1 -0.3633 0.8898 -0.5142 19 1 -0.3634 -0.8902 -0.5135 20 1 5.9062 3.4523 -0.0152 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261003904.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:19 Heat of formation + Delta-G solvation = -56.813000 kcal Electronic energy + Delta-G solvation = -10616.191849 eV Core-core repulsion = 8392.135854 eV Total energy + Delta-G solvation = -2224.055995 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.048 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.54500 -39.14863 -37.78597 -35.85349 -33.21667 -30.92498 -27.28398 -25.98455 -24.36911 -20.61221 -20.18883 -17.99662 -17.85440 -17.29719 -16.68267 -15.00974 -14.88599 -14.79642 -13.78755 -13.71714 -13.43601 -13.29407 -13.15016 -12.87453 -12.55942 -12.07219 -11.49754 -11.45174 -9.94104 -9.74577 -8.77696 -6.99372 -0.02816 0.79128 1.36027 1.47456 1.52322 1.61305 2.11445 2.40618 2.98583 3.17899 3.91693 4.58727 4.66709 4.81971 4.84737 4.99410 5.36498 5.50217 5.75654 6.16496 6.24931 6.36802 7.97723 8.76469 Molecular weight = 182.05amu Principal moments of inertia in cm(-1) A = 0.067869 B = 0.014243 C = 0.011848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.460270 B = 1965.438094 C = 2362.749507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C 0.069 3.931 3 N -0.297 5.297 4 N -0.370 5.370 5 C 0.051 3.949 6 C -0.329 4.329 7 H 0.113 0.887 8 C 0.003 3.997 9 N -0.697 5.697 10 Si 1.014 2.986 11 H -0.249 1.249 12 H -0.254 1.254 13 H -0.254 1.254 14 C 0.462 3.538 15 O -0.499 6.499 16 O -0.306 6.306 17 H 0.091 0.909 18 H 0.101 0.899 19 H 0.090 0.910 20 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.020 0.223 -0.032 0.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.143 4.143 3 N -0.140 5.140 4 N -0.220 5.220 5 C -0.085 4.085 6 C -0.365 4.365 7 H 0.131 0.869 8 C -0.225 4.225 9 N -0.318 5.318 10 Si 0.830 3.170 11 H -0.172 1.172 12 H -0.178 1.178 13 H -0.178 1.178 14 C 0.305 3.695 15 O -0.385 6.385 16 O -0.210 6.210 17 H 0.110 0.890 18 H 0.119 0.881 19 H 0.109 0.891 20 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.025 1.259 -0.031 1.260 hybrid contribution 0.584 -1.406 0.006 1.522 sum 0.609 -0.147 -0.025 0.627 Atomic orbital electron populations 1.20371 0.80519 1.04802 1.04482 1.26904 0.97831 0.78217 1.11304 1.72103 1.07277 1.22286 1.12301 1.74410 0.94190 1.20817 1.32553 1.23009 0.98097 0.87042 1.00367 1.20273 0.89186 0.96429 1.30575 0.86907 1.27523 1.07914 0.93401 0.93635 1.70034 1.41302 1.00414 1.20062 0.84687 0.71680 0.80710 0.79967 1.17160 1.17767 1.17773 1.22706 0.80450 0.92242 0.74112 1.90697 1.62220 1.37104 1.48522 1.83744 1.22376 1.37846 1.77084 0.89030 0.88052 0.89099 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.34 10.35 71.24 0.74 -0.61 14 2 C 0.07 3.21 7.93 88.24 0.70 3.91 14 3 N -0.30 -15.89 11.29 -165.19 -1.87 -17.75 14 4 N -0.37 -21.65 9.23 -47.86 -0.44 -22.09 14 5 C 0.05 2.92 6.81 41.93 0.29 3.21 14 6 C -0.33 -17.21 9.03 23.28 0.21 -16.99 14 7 H 0.11 5.56 7.58 -2.91 -0.02 5.54 14 8 C 0.00 0.12 5.50 85.44 0.47 0.59 14 9 N -0.70 -34.84 11.53 21.92 0.25 -34.59 14 10 Si 1.01 33.41 29.56 68.60 2.03 35.44 14 11 H -0.25 -7.97 7.11 99.48 0.71 -7.26 14 12 H -0.25 -7.86 7.11 99.48 0.71 -7.15 14 13 H -0.25 -7.86 7.11 99.48 0.71 -7.16 14 14 C 0.46 25.49 8.26 70.43 0.58 26.08 14 15 O -0.50 -27.96 17.42 19.47 0.34 -27.62 14 16 O -0.31 -15.44 9.98 15.12 0.15 -15.29 14 17 H 0.09 2.43 8.14 -2.39 -0.02 2.42 14 18 H 0.10 2.81 8.14 -2.39 -0.02 2.79 14 19 H 0.09 2.37 8.14 -2.39 -0.02 2.35 14 20 H 0.30 13.05 8.29 -92.71 -0.77 12.28 14 Total: -1.00 -66.63 198.52 4.72 -61.91 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.27 Total: 3.81 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 2.99 Total: 16.18 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -2.05 Total: -74.43 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: 0.49 Total: -42.92 kcal Atomic # 14 Polarization: 33.41 SS G_CDS: 2.03 Total: 35.44 kcal Total: -66.63 4.72 -61.91 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261003904.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.101 kcal (2) G-P(sol) polarization free energy of solvation -66.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds