Wall clock time and date at job start Mon Mar 30 2020 02:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31834 * 120.39106 * 2 1 4 4 C 1.33484 * 120.72419 * 179.97438 * 3 2 1 5 5 C 1.41454 * 119.24525 * 180.02562 * 4 3 2 6 6 H 1.07998 * 120.00440 * 0.02562 * 5 4 3 7 7 C 1.40062 * 120.00180 * 180.02562 * 5 4 3 8 8 N 1.30701 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00186 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46941 * 60.00075 * 9 7 5 11 11 H 1.48506 * 109.46809 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47178 * 299.99468 * 9 7 5 13 13 N 1.33501 * 121.50658 * 359.97438 * 4 3 2 14 14 C 1.31813 * 120.72126 * 0.02562 * 13 4 3 15 15 C 1.39382 * 120.38940 * 179.97438 * 2 1 3 16 16 F 1.35106 * 120.69531 * 0.02562 * 15 2 1 17 17 H 1.09001 * 109.47351 * 89.99233 * 1 2 3 18 18 H 1.08998 * 109.47454 * 209.99555 * 1 2 3 19 19 H 1.09006 * 109.46608 * 329.99666 * 1 2 3 20 20 H 0.97001 * 120.00158 * 180.02562 * 8 7 5 21 21 H 1.08001 * 120.38837 * 179.97438 * 14 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1739 1.1372 0.0000 4 6 3.5088 1.1449 0.0005 5 6 4.1927 2.3832 0.0010 6 1 3.6351 3.3081 0.0015 7 6 5.5930 2.4098 0.0010 8 7 6.2679 1.2905 0.0011 9 14 6.4961 4.0450 0.0025 10 1 6.1227 4.8156 1.2157 11 1 7.9611 3.8013 0.0016 12 1 6.1228 4.8178 -1.2094 13 7 4.2130 0.0108 0.0016 14 6 3.6056 -1.1590 0.0016 15 6 2.2121 -1.2023 0.0005 16 9 1.5588 -2.3850 0.0005 17 1 -0.3634 0.0001 -1.0277 18 1 -0.3634 -0.8900 0.5137 19 1 -0.3633 0.8900 0.5139 20 1 7.2377 1.3089 0.0014 21 1 4.1807 -2.0732 0.0020 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261069024.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:04 Heat of formation + Delta-G solvation = -29.704763 kcal Electronic energy + Delta-G solvation = -10435.718422 eV Core-core repulsion = 8225.210718 eV Total energy + Delta-G solvation = -2210.507704 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 182.055 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -49.33264 -40.85422 -35.91093 -34.53268 -32.48832 -29.29219 -27.91130 -24.07119 -23.34021 -19.53331 -18.64657 -17.81468 -17.11881 -16.51831 -15.98570 -14.77739 -14.72841 -14.46021 -13.75592 -13.62830 -13.09945 -13.01263 -12.83364 -12.75341 -12.03211 -11.63797 -11.24079 -11.12038 -9.72250 -9.40454 -8.54288 -6.82615 0.45296 0.75449 1.41077 1.52299 1.56008 2.18250 2.62691 3.59404 3.67836 3.70398 3.92091 4.26246 4.50284 4.73915 4.75475 5.02038 5.04394 5.21249 5.76683 6.05426 6.33178 6.50945 6.97201 8.01391 8.26071 Molecular weight = 182.06amu Principal moments of inertia in cm(-1) A = 0.080596 B = 0.012449 C = 0.010847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.328615 B = 2248.627850 C = 2580.812398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.159 3.841 3 N -0.597 5.597 4 C 0.347 3.653 5 C -0.419 4.419 6 H 0.098 0.902 7 C 0.021 3.979 8 N -0.741 5.741 9 Si 1.006 2.994 10 H -0.256 1.256 11 H -0.261 1.261 12 H -0.256 1.256 13 N -0.523 5.523 14 C 0.133 3.867 15 C -0.185 4.185 16 F -0.149 7.149 17 H 0.090 0.910 18 H 0.086 0.914 19 H 0.082 0.918 20 H 0.290 0.710 21 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.090 0.423 -0.028 2.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.005 3.995 3 N -0.318 5.318 4 C 0.112 3.888 5 C -0.453 4.453 6 H 0.116 0.884 7 C -0.204 4.204 8 N -0.362 5.362 9 Si 0.824 3.176 10 H -0.180 1.180 11 H -0.185 1.185 12 H -0.180 1.180 13 N -0.240 5.240 14 C -0.042 4.042 15 C -0.214 4.214 16 F -0.129 7.129 17 H 0.108 0.892 18 H 0.104 0.896 19 H 0.101 0.899 20 H 0.101 0.899 21 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.352 1.231 -0.026 1.829 hybrid contribution -0.110 -0.821 -0.008 0.828 sum -1.462 0.410 -0.034 1.519 Atomic orbital electron populations 1.20646 0.86235 1.03889 1.03913 1.22149 0.98842 0.87422 0.91064 1.68624 1.10041 1.28345 1.24770 1.20441 0.85101 0.93257 0.90010 1.19791 0.92214 0.91643 1.41661 0.88373 1.27181 0.97955 1.02931 0.92285 1.70165 1.09320 1.30266 1.26450 0.84908 0.76872 0.75419 0.80409 1.17983 1.18532 1.17991 1.69393 1.38054 0.97045 1.19535 1.23595 0.90261 0.98327 0.91999 1.19004 0.92717 0.82274 1.27374 1.91289 1.81237 1.44307 1.96061 0.89150 0.89554 0.89937 0.89937 0.81852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.10 10.06 71.24 0.72 -2.38 14 2 C 0.16 7.48 6.84 42.83 0.29 7.78 14 3 N -0.60 -32.07 10.29 -181.87 -1.87 -33.95 14 4 C 0.35 19.98 7.36 135.10 0.99 20.98 14 5 C -0.42 -22.90 9.37 23.51 0.22 -22.68 14 6 H 0.10 5.10 7.85 -2.91 -0.02 5.07 14 7 C 0.02 1.03 5.50 85.30 0.47 1.50 14 8 N -0.74 -38.40 11.42 21.84 0.25 -38.15 14 9 Si 1.01 36.23 29.56 68.60 2.03 38.26 14 10 H -0.26 -8.91 7.11 99.48 0.71 -8.21 14 11 H -0.26 -8.74 7.11 99.48 0.71 -8.04 14 12 H -0.26 -8.91 7.11 99.48 0.71 -8.21 14 13 N -0.52 -29.55 7.86 -193.75 -1.52 -31.08 14 14 C 0.13 6.61 11.31 84.98 0.96 7.57 14 15 C -0.18 -8.72 7.35 22.83 0.17 -8.55 14 16 F -0.15 -6.30 16.62 44.97 0.75 -5.56 14 17 H 0.09 2.77 8.14 -2.39 -0.02 2.76 14 18 H 0.09 2.63 7.72 -2.39 -0.02 2.61 14 19 H 0.08 2.67 8.14 -2.38 -0.02 2.65 14 20 H 0.29 13.29 8.29 -92.71 -0.77 12.52 14 21 H 0.16 6.99 8.06 -2.91 -0.02 6.96 14 Total: -1.00 -62.82 203.05 4.70 -58.12 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 1.25 Total: 8.13 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 3.82 Total: 4.22 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -3.14 Total: -103.18 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.75 Total: -5.56 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Total: -62.82 4.70 -58.12 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261069024.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.416 kcal (2) G-P(sol) polarization free energy of solvation -62.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds