Wall clock time and date at job start Mon Mar 30 2020 02:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48620 * 110.99796 * 2 1 4 4 C 1.54558 * 104.64604 * 201.27891 * 3 2 1 5 5 C 1.53621 * 104.75408 * 23.75834 * 4 3 2 6 6 C 1.52432 * 121.51588 * 143.76417 * 5 4 3 7 7 C 1.52305 * 121.43946 * 215.97514 * 5 4 3 8 8 H 1.08997 * 117.51499 * 141.63000 * 7 5 4 9 9 C 1.50698 * 117.51878 * 356.54167 * 7 5 4 10 10 H 1.08005 * 119.99819 * 0.18020 * 9 7 5 11 11 C 1.37875 * 120.00046 * 180.17361 * 9 7 5 12 12 N 1.31511 * 120.00192 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47297 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47261 * 60.00310 * 13 11 9 16 16 H 1.48500 * 109.47454 * 300.00304 * 13 11 9 17 17 C 1.48730 * 111.00219 * 244.42069 * 2 1 3 18 18 H 1.09002 * 109.47507 * 60.12646 * 1 2 3 19 19 H 1.09001 * 109.47136 * 180.12023 * 1 2 3 20 20 H 1.09000 * 109.47596 * 300.12106 * 1 2 3 21 21 H 1.09003 * 110.39915 * 82.49227 * 3 2 1 22 22 H 1.09000 * 110.40349 * 320.07990 * 3 2 1 23 23 H 1.08997 * 110.38630 * 264.93357 * 4 3 2 24 24 H 1.09005 * 110.37678 * 142.57292 * 4 3 2 25 25 H 1.08998 * 117.54951 * 3.36963 * 6 5 4 26 26 H 1.09009 * 117.54187 * 218.20416 * 6 5 4 27 27 H 0.97001 * 119.99934 * 359.97438 * 12 11 9 28 28 H 1.09002 * 110.44801 * 39.73581 * 17 2 1 29 29 H 1.08996 * 110.44871 * 277.19147 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0015 1.3875 0.0000 4 6 3.4424 1.2530 -0.5427 5 6 3.4321 -0.0461 -1.3625 6 6 4.2400 -0.1837 -2.6477 7 6 4.6401 -0.9729 -1.3977 8 1 4.4514 -2.0464 -1.3980 9 6 5.8787 -0.5306 -0.6619 10 1 5.8855 0.4114 -0.1336 11 6 7.0031 -1.3285 -0.6632 12 7 6.9950 -2.4753 -1.3068 13 14 8.5381 -0.7806 0.2494 14 1 9.5994 -1.8077 0.0944 15 1 8.2224 -0.6080 1.6902 16 1 9.0133 0.5099 -0.3112 17 6 2.0020 -0.5995 -1.2524 18 1 -0.3634 0.5119 -0.8911 19 1 -0.3633 -1.0277 0.0022 20 1 -0.3634 0.5157 0.8889 21 1 2.0130 1.7900 1.0129 22 1 1.4062 2.0230 -0.6556 23 1 4.1526 1.1768 0.2806 24 1 3.6887 2.1023 -1.1802 25 1 4.8728 0.6551 -2.9377 26 1 3.7882 -0.7383 -3.4702 27 1 6.1978 -2.7600 -1.7804 28 1 1.4052 -0.2856 -2.1089 29 1 2.0191 -1.6867 -1.1769 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261145693.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:59 Heat of formation + Delta-G solvation = 21.107009 kcal Electronic energy + Delta-G solvation = -10982.779319 eV Core-core repulsion = 9099.194289 eV Total energy + Delta-G solvation = -1883.585030 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.77812 -35.28144 -32.21328 -29.88214 -27.18622 -24.77096 -24.01394 -20.81556 -20.71026 -18.45004 -16.44504 -15.15446 -15.02356 -14.09239 -13.76244 -13.67749 -12.93175 -12.40512 -12.03949 -11.87129 -11.18390 -11.08314 -10.95778 -10.77473 -10.53151 -10.09908 -10.07301 -9.41205 -8.69119 -8.37773 -8.19491 -8.07412 -6.38384 -4.03250 3.44801 3.46382 3.65156 4.34517 4.52504 4.98561 5.20208 5.29664 5.44488 5.55214 5.66863 5.67760 5.85002 5.94408 6.00182 6.25052 6.34145 6.43304 6.59784 6.75049 6.80695 6.88196 7.08841 7.27429 7.38472 7.42365 8.28329 8.43755 8.85892 9.65499 11.01578 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.062941 B = 0.011119 C = 0.010501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.754141 B = 2517.674740 C = 2665.781674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.513 5.513 3 C 0.035 3.965 4 C -0.078 4.078 5 C -0.157 4.157 6 C -0.203 4.203 7 C 0.033 3.967 8 H 0.063 0.937 9 C -0.567 4.567 10 H 0.056 0.944 11 C 0.022 3.978 12 N -0.907 5.907 13 Si 1.070 2.930 14 H -0.282 1.282 15 H -0.286 1.286 16 H -0.287 1.287 17 C 0.075 3.925 18 H 0.022 0.978 19 H 0.065 0.935 20 H 0.064 0.936 21 H 0.073 0.927 22 H 0.034 0.966 23 H 0.080 0.920 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.271 0.729 28 H 0.033 0.967 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.670 5.552 1.014 10.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.236 5.236 3 C -0.093 4.093 4 C -0.116 4.116 5 C -0.158 4.158 6 C -0.242 4.242 7 C 0.015 3.985 8 H 0.081 0.919 9 C -0.604 4.604 10 H 0.074 0.926 11 C -0.183 4.183 12 N -0.542 5.542 13 Si 0.898 3.102 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.214 1.214 17 C -0.053 4.053 18 H 0.040 0.960 19 H 0.084 0.916 20 H 0.083 0.917 21 H 0.092 0.908 22 H 0.052 0.948 23 H 0.098 0.902 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.963 4.797 1.871 8.660 hybrid contribution -2.115 0.982 -1.246 2.644 sum -9.079 5.779 0.625 10.780 Atomic orbital electron populations 1.22489 0.89125 1.01686 1.00109 1.65329 1.06859 1.15563 1.35878 1.23141 0.96368 0.89580 1.00194 1.21630 0.94840 0.95757 0.99367 1.21540 0.92350 0.99840 1.02033 1.23154 1.04132 1.05621 0.91256 1.19932 0.92115 0.92544 0.93941 0.91906 1.21488 0.97112 1.07549 1.34262 0.92613 1.25884 1.01810 0.93986 0.96586 1.70777 1.31884 1.20712 1.30781 0.83537 0.75321 0.75574 0.75808 1.20736 1.21287 1.21399 1.22485 0.94211 0.99266 0.89317 0.95974 0.91623 0.91734 0.90814 0.94807 0.90153 0.92612 0.90230 0.91768 0.91844 0.94907 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.52 60.06 0.57 0.78 15 2 N -0.51 -9.19 5.66 -238.33 -1.35 -10.53 15 3 C 0.04 0.59 6.51 -2.05 -0.01 0.58 15 4 C -0.08 -1.56 6.30 -25.59 -0.16 -1.72 15 5 C -0.16 -3.43 2.50 -154.45 -0.39 -3.82 15 6 C -0.20 -4.65 10.00 -26.95 -0.27 -4.92 15 7 C 0.03 0.86 5.11 -92.05 -0.47 0.39 15 8 H 0.06 1.72 7.07 -51.93 -0.37 1.35 15 9 C -0.57 -16.02 8.76 -34.44 -0.30 -16.32 15 10 H 0.06 1.55 6.29 -52.48 -0.33 1.22 15 11 C 0.02 0.64 5.46 -17.82 -0.10 0.54 15 12 N -0.91 -27.49 13.65 55.43 0.76 -26.73 15 13 Si 1.07 25.11 29.90 -169.99 -5.08 20.03 15 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 15 H -0.29 -6.44 7.11 56.52 0.40 -6.04 15 16 H -0.29 -6.44 7.11 56.52 0.40 -6.04 15 17 C 0.07 1.43 6.29 -2.43 -0.02 1.41 15 18 H 0.02 0.29 7.98 -51.93 -0.41 -0.13 15 19 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 20 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.03 0.52 7.97 -51.93 -0.41 0.11 15 23 H 0.08 1.75 6.58 -51.93 -0.34 1.41 15 24 H 0.06 1.05 8.14 -51.93 -0.42 0.62 15 25 H 0.08 1.84 8.14 -51.93 -0.42 1.42 15 26 H 0.06 1.36 8.14 -51.92 -0.42 0.93 15 27 H 0.27 8.17 6.80 -40.82 -0.28 7.89 15 28 H 0.03 0.58 7.90 -51.93 -0.41 0.17 15 29 H 0.07 1.43 8.11 -51.93 -0.42 1.00 15 LS Contribution 238.54 15.07 3.59 3.59 Total: -1.00 -29.95 238.54 -7.53 -37.48 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -4.31 Total: -0.77 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -1.14 Total: -23.07 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.59 Total: -37.26 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.95 -7.53 -37.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145693.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.589 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds