Wall clock time and date at job start Mon Mar 30 2020 02:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48590 * 111.00148 * 2 1 4 4 C 1.55089 * 103.34062 * 159.37866 * 3 2 1 5 5 C 1.53977 * 102.87773 * 323.06559 * 4 3 2 6 6 C 1.52314 * 121.18528 * 237.66128 * 5 4 3 7 7 C 1.52308 * 121.20170 * 165.67147 * 5 4 3 8 8 H 1.09006 * 117.50922 * 218.04278 * 7 5 4 9 9 C 1.50695 * 117.51666 * 3.16518 * 7 5 4 10 10 H 1.07995 * 120.00141 * 359.97438 * 9 7 5 11 11 C 1.37877 * 119.99602 * 180.02562 * 9 7 5 12 12 N 1.31519 * 119.99977 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00060 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47007 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47252 * 119.99848 * 13 11 9 16 16 H 1.48502 * 109.47601 * 239.99907 * 13 11 9 17 17 C 1.48096 * 110.99493 * 117.45631 * 2 1 3 18 18 H 1.08997 * 109.47075 * 59.87795 * 1 2 3 19 19 H 1.09001 * 109.47114 * 179.87575 * 1 2 3 20 20 H 1.09000 * 109.47228 * 299.87371 * 1 2 3 21 21 H 1.09007 * 110.64275 * 40.91735 * 3 2 1 22 22 H 1.08992 * 110.78315 * 277.91006 * 3 2 1 23 23 H 1.09002 * 110.76229 * 81.46441 * 4 3 2 24 24 H 1.09000 * 110.76383 * 204.67080 * 4 3 2 25 25 H 1.08999 * 117.51605 * 356.80299 * 6 5 4 26 26 H 1.09003 * 117.51424 * 141.88195 * 6 5 4 27 27 H 0.97004 * 119.99545 * 179.97438 * 12 11 9 28 28 H 1.09004 * 110.00964 * 333.56806 * 17 2 1 29 29 H 1.09002 * 110.00544 * 94.92966 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3872 0.0000 4 6 3.4483 1.2151 0.5315 5 6 3.2954 0.1081 1.5908 6 6 3.7079 0.3396 3.0386 7 6 4.5098 -0.6189 2.1533 8 1 4.4114 -1.6867 2.3490 9 6 5.8697 -0.1649 1.6892 10 1 5.9559 0.6477 0.9831 11 6 7.0040 -0.7876 2.1654 12 7 6.8990 -1.7775 3.0250 13 14 8.6897 -0.2254 1.5897 14 1 8.5360 0.8975 0.6301 15 1 9.4860 0.2282 2.7581 16 1 9.3874 -1.3545 0.9235 17 6 1.9996 -0.6375 1.2269 18 1 -0.3633 0.5157 -0.8889 19 1 -0.3633 -1.0277 -0.0022 20 1 -0.3634 0.5119 0.8911 21 1 1.4196 2.0222 0.6681 22 1 2.0092 1.7985 -1.0093 23 1 4.1179 0.8959 -0.2672 24 1 3.8052 2.1389 0.9868 25 1 4.1642 1.2982 3.2851 26 1 3.0817 -0.0972 3.8166 27 1 7.6970 -2.2158 3.3597 28 1 1.2770 -0.5450 2.0377 29 1 2.2154 -1.6890 1.0373 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261145694.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:02 Heat of formation + Delta-G solvation = 23.141436 kcal Electronic energy + Delta-G solvation = -10933.495408 eV Core-core repulsion = 9049.998598 eV Total energy + Delta-G solvation = -1883.496810 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.66967 -35.09645 -32.15592 -29.81399 -27.21732 -25.29961 -23.93798 -20.70637 -20.44377 -18.15286 -16.19783 -15.13351 -15.07676 -14.33371 -13.88586 -13.13401 -12.94077 -12.41418 -12.10672 -11.44993 -11.20867 -11.08291 -11.02520 -10.78578 -10.66417 -10.16807 -10.04327 -9.42956 -8.97417 -8.40313 -8.14994 -7.99185 -6.06944 -4.05370 3.28767 3.36879 3.41160 4.40035 4.43982 4.97590 5.26362 5.36430 5.48302 5.60366 5.71995 5.77321 5.96685 5.98368 6.07116 6.41811 6.45910 6.60106 6.74637 6.83962 6.91022 6.97152 7.19087 7.38053 7.47000 7.65793 7.90744 8.45314 8.96627 9.54744 11.03926 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.071340 B = 0.010668 C = 0.010011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.393784 B = 2624.108300 C = 2796.173651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.522 5.522 3 C 0.035 3.965 4 C -0.072 4.072 5 C -0.175 4.175 6 C -0.199 4.199 7 C 0.054 3.946 8 H 0.076 0.924 9 C -0.490 4.490 10 H 0.062 0.938 11 C 0.065 3.935 12 N -0.888 5.888 13 Si 0.895 3.105 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.079 3.921 18 H 0.062 0.938 19 H 0.064 0.936 20 H 0.022 0.978 21 H 0.036 0.964 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.261 0.739 28 H 0.033 0.967 29 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.140 3.956 -3.555 9.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.246 5.246 3 C -0.092 4.092 4 C -0.110 4.110 5 C -0.176 4.176 6 C -0.237 4.237 7 C 0.036 3.964 8 H 0.094 0.906 9 C -0.527 4.527 10 H 0.080 0.920 11 C -0.137 4.137 12 N -0.525 5.525 13 Si 0.723 3.277 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.048 4.048 18 H 0.081 0.919 19 H 0.083 0.917 20 H 0.041 0.959 21 H 0.054 0.946 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.883 3.533 -3.927 9.489 hybrid contribution 0.459 0.722 0.622 1.058 sum -7.424 4.255 -3.305 9.173 Atomic orbital electron populations 1.22480 0.89059 1.01546 1.00045 1.64751 1.06875 1.15265 1.37733 1.23258 0.96650 0.89477 0.99862 1.21757 0.94164 0.97309 0.97788 1.21885 0.98287 1.02265 0.95131 1.23104 1.06439 1.03842 0.90344 1.19863 0.88720 0.93859 0.93979 0.90564 1.20704 0.89221 1.17346 1.25446 0.91965 1.25043 0.99390 0.94606 0.94699 1.69981 1.29184 1.22710 1.30620 0.86486 0.83898 0.78750 0.78599 1.19574 1.20966 1.20855 1.22316 0.94577 0.98772 0.89184 0.91885 0.91738 0.95929 0.94600 0.90991 0.90675 0.92099 0.90514 0.91849 0.92881 0.94902 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.41 60.07 0.57 0.81 15 2 N -0.52 -9.13 5.56 -238.48 -1.33 -10.46 15 3 C 0.04 0.59 6.57 -1.78 -0.01 0.58 15 4 C -0.07 -1.43 5.72 -25.12 -0.14 -1.58 15 5 C -0.17 -3.80 2.45 -154.25 -0.38 -4.18 15 6 C -0.20 -4.57 9.99 -27.01 -0.27 -4.84 15 7 C 0.05 1.41 5.48 -92.05 -0.50 0.90 15 8 H 0.08 2.12 7.90 -51.93 -0.41 1.71 15 9 C -0.49 -13.61 8.84 -34.44 -0.30 -13.91 15 10 H 0.06 1.70 6.81 -52.49 -0.36 1.34 15 11 C 0.07 1.83 5.46 -17.82 -0.10 1.73 15 12 N -0.89 -26.03 13.13 55.43 0.73 -25.30 15 13 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 15 14 H -0.27 -6.33 7.11 56.52 0.40 -5.92 15 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 17 C 0.08 1.52 6.51 -2.72 -0.02 1.50 15 18 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 19 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 20 H 0.02 0.30 8.00 -51.93 -0.42 -0.12 15 21 H 0.04 0.57 7.99 -51.92 -0.42 0.15 15 22 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 23 H 0.07 1.57 7.78 -51.93 -0.40 1.17 15 24 H 0.06 1.17 8.12 -51.93 -0.42 0.75 15 25 H 0.08 1.77 8.14 -51.93 -0.42 1.34 15 26 H 0.06 1.37 8.14 -51.93 -0.42 0.94 15 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 28 H 0.03 0.59 7.70 -51.93 -0.40 0.19 15 29 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 LS Contribution 241.44 15.07 3.64 3.64 Total: -1.00 -28.85 241.44 -7.64 -36.49 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.49 Total: -1.66 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -1.16 Total: -18.98 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.60 Total: -35.76 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.85 -7.64 -36.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145694.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.628 kcal (2) G-P(sol) polarization free energy of solvation -28.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds