Wall clock time and date at job start Mon Mar 30 2020 02:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48590 * 111.00148 * 2 1 4 4 C 1.55089 * 103.34062 * 159.37866 * 3 2 1 5 5 C 1.53977 * 102.87773 * 323.06559 * 4 3 2 6 6 C 1.52314 * 121.18528 * 237.66128 * 5 4 3 7 7 C 1.52308 * 121.20170 * 165.67147 * 5 4 3 8 8 H 1.09006 * 117.50922 * 218.04278 * 7 5 4 9 9 C 1.50695 * 117.51666 * 3.16518 * 7 5 4 10 10 H 1.07995 * 120.00141 * 359.97438 * 9 7 5 11 11 C 1.37877 * 119.99602 * 180.02562 * 9 7 5 12 12 N 1.31519 * 119.99977 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00060 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47007 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47252 * 119.99848 * 13 11 9 16 16 H 1.48502 * 109.47601 * 239.99907 * 13 11 9 17 17 C 1.48096 * 110.99493 * 117.45631 * 2 1 3 18 18 H 1.08997 * 109.47075 * 59.87795 * 1 2 3 19 19 H 1.09001 * 109.47114 * 179.87575 * 1 2 3 20 20 H 1.09000 * 109.47228 * 299.87371 * 1 2 3 21 21 H 1.09007 * 110.64275 * 40.91735 * 3 2 1 22 22 H 1.08992 * 110.78315 * 277.91006 * 3 2 1 23 23 H 1.09002 * 110.76229 * 81.46441 * 4 3 2 24 24 H 1.09000 * 110.76383 * 204.67080 * 4 3 2 25 25 H 1.08999 * 117.51605 * 356.80299 * 6 5 4 26 26 H 1.09003 * 117.51424 * 141.88195 * 6 5 4 27 27 H 0.97004 * 119.99545 * 179.97438 * 12 11 9 28 28 H 1.09004 * 110.00964 * 333.56806 * 17 2 1 29 29 H 1.09002 * 110.00544 * 94.92966 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3872 0.0000 4 6 3.4483 1.2151 0.5315 5 6 3.2954 0.1081 1.5908 6 6 3.7079 0.3396 3.0386 7 6 4.5098 -0.6189 2.1533 8 1 4.4114 -1.6867 2.3490 9 6 5.8697 -0.1649 1.6892 10 1 5.9559 0.6477 0.9831 11 6 7.0040 -0.7876 2.1654 12 7 6.8990 -1.7775 3.0250 13 14 8.6897 -0.2254 1.5897 14 1 8.5360 0.8975 0.6301 15 1 9.4860 0.2282 2.7581 16 1 9.3874 -1.3545 0.9235 17 6 1.9996 -0.6375 1.2269 18 1 -0.3633 0.5157 -0.8889 19 1 -0.3633 -1.0277 -0.0022 20 1 -0.3634 0.5119 0.8911 21 1 1.4196 2.0222 0.6681 22 1 2.0092 1.7985 -1.0093 23 1 4.1179 0.8959 -0.2672 24 1 3.8052 2.1389 0.9868 25 1 4.1642 1.2982 3.2851 26 1 3.0817 -0.0972 3.8166 27 1 7.6970 -2.2158 3.3597 28 1 1.2770 -0.5450 2.0377 29 1 2.2154 -1.6890 1.0373 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261145694.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:02 Heat of formation + Delta-G solvation = 4.570525 kcal Electronic energy + Delta-G solvation = -10934.300703 eV Core-core repulsion = 9049.998598 eV Total energy + Delta-G solvation = -1884.302105 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.24794 -36.76746 -34.21025 -31.26422 -28.80308 -27.26221 -25.32748 -22.45905 -22.06982 -19.87689 -18.26088 -16.83290 -16.51592 -16.03581 -15.37268 -14.85312 -14.50861 -13.91715 -13.60706 -13.25185 -12.91667 -12.89558 -12.43180 -12.34440 -12.27404 -12.01639 -11.72268 -11.35441 -11.00934 -10.34899 -10.03753 -9.35098 -8.18835 -6.23470 1.41005 1.42177 1.54981 2.40995 2.96340 3.11992 3.51447 3.76131 4.01794 4.25891 4.37468 4.53283 4.54875 4.67283 4.74910 4.84712 4.93901 4.99665 5.03687 5.12162 5.15460 5.32691 5.50187 5.53545 5.78268 5.93907 6.17985 6.36473 6.83578 7.39435 8.93259 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.071340 B = 0.010668 C = 0.010011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.393784 B = 2624.108300 C = 2796.173651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.537 5.537 3 C 0.045 3.955 4 C -0.076 4.076 5 C -0.157 4.157 6 C -0.190 4.190 7 C 0.013 3.987 8 H 0.043 0.957 9 C -0.503 4.503 10 H 0.062 0.938 11 C 0.010 3.990 12 N -0.927 5.927 13 Si 0.964 3.036 14 H -0.263 1.263 15 H -0.279 1.279 16 H -0.278 1.278 17 C 0.083 3.917 18 H 0.084 0.916 19 H 0.072 0.928 20 H 0.030 0.970 21 H 0.051 0.949 22 H 0.094 0.906 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.263 0.737 28 H 0.047 0.953 29 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 5.273 -4.487 11.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.261 5.261 3 C -0.082 4.082 4 C -0.114 4.114 5 C -0.158 4.158 6 C -0.228 4.228 7 C -0.006 4.006 8 H 0.062 0.938 9 C -0.541 4.541 10 H 0.080 0.920 11 C -0.189 4.189 12 N -0.566 5.566 13 Si 0.789 3.211 14 H -0.187 1.187 15 H -0.204 1.204 16 H -0.204 1.204 17 C -0.045 4.045 18 H 0.103 0.897 19 H 0.090 0.910 20 H 0.049 0.951 21 H 0.070 0.930 22 H 0.113 0.887 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.876 4.863 -4.869 11.231 hybrid contribution 0.685 0.299 0.905 1.174 sum -8.191 5.162 -3.963 10.461 Atomic orbital electron populations 1.22576 0.86474 1.02638 1.01458 1.64741 1.09374 1.15611 1.36416 1.23236 0.94188 0.89462 1.01351 1.21782 0.96420 0.96533 0.96680 1.21970 0.97310 1.01764 0.94715 1.23028 1.05558 1.02554 0.91645 1.19713 0.90127 0.92726 0.98035 0.93846 1.21006 0.90475 1.17313 1.25283 0.91982 1.25901 1.03366 0.94750 0.94865 1.70107 1.30252 1.24123 1.32157 0.85415 0.78971 0.78477 0.78277 1.18655 1.20426 1.20411 1.22213 0.93664 0.97947 0.90696 0.89746 0.90961 0.95113 0.93046 0.88736 0.92331 0.91783 0.90729 0.90655 0.92780 0.93448 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.41 127.69 1.20 1.60 15 2 N -0.54 -17.29 5.56 -908.41 -5.05 -22.34 15 3 C 0.05 1.36 6.57 86.69 0.57 1.93 15 4 C -0.08 -2.91 5.72 31.64 0.18 -2.73 15 5 C -0.16 -6.73 2.45 -52.02 -0.13 -6.86 15 6 C -0.19 -8.68 9.99 30.42 0.30 -8.38 15 7 C 0.01 0.67 5.48 -11.72 -0.06 0.61 15 8 H 0.04 2.55 7.90 -2.38 -0.02 2.53 15 9 C -0.50 -28.48 8.84 25.60 0.23 -28.26 15 10 H 0.06 3.41 6.81 -2.91 -0.02 3.39 15 11 C 0.01 0.56 5.46 84.65 0.46 1.02 15 12 N -0.93 -55.84 13.13 21.45 0.28 -55.55 15 13 Si 0.96 44.11 29.54 68.60 2.03 46.14 15 14 H -0.26 -11.51 7.11 99.48 0.71 -10.80 15 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 17 C 0.08 3.06 6.51 86.36 0.56 3.62 15 18 H 0.08 1.68 8.14 -2.39 -0.02 1.66 15 19 H 0.07 1.62 8.14 -2.39 -0.02 1.60 15 20 H 0.03 0.70 8.00 -2.39 -0.02 0.68 15 21 H 0.05 1.42 7.99 -2.38 -0.02 1.40 15 22 H 0.09 2.46 8.14 -2.39 -0.02 2.44 15 23 H 0.06 2.42 7.78 -2.39 -0.02 2.40 15 24 H 0.06 2.37 8.12 -2.39 -0.02 2.35 15 25 H 0.07 3.41 8.14 -2.39 -0.02 3.39 15 26 H 0.07 3.21 8.14 -2.39 -0.02 3.19 15 27 H 0.26 14.87 8.31 -92.71 -0.77 14.10 15 28 H 0.05 1.61 7.70 -2.38 -0.02 1.59 15 29 H 0.06 2.43 8.14 -2.39 -0.02 2.41 15 Total: -1.00 -62.02 241.44 1.67 -60.35 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 1.10 Total: 8.85 kcal Atomic # 6 Polarization: -40.76 SS G_CDS: 3.31 Total: -37.45 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -4.77 Total: -77.89 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -62.02 1.67 -60.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145694.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.919 kcal (2) G-P(sol) polarization free energy of solvation -62.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds