Wall clock time and date at job start Mon Mar 30 2020 02:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48594 * 110.99714 * 2 1 4 4 C 1.55091 * 103.34038 * 200.62537 * 3 2 1 5 5 C 1.53974 * 102.70840 * 36.84338 * 4 3 2 6 6 C 1.52445 * 121.20550 * 194.33963 * 5 4 3 7 7 C 1.52314 * 121.17557 * 122.38918 * 5 4 3 8 8 H 1.08997 * 117.51505 * 3.16576 * 7 5 4 9 9 C 1.50698 * 117.51639 * 218.08128 * 7 5 4 10 10 H 1.08005 * 119.99819 * 0.17646 * 9 7 5 11 11 C 1.37875 * 120.00046 * 180.16987 * 9 7 5 12 12 N 1.31511 * 120.00192 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47297 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47261 * 60.00310 * 13 11 9 16 16 H 1.48500 * 109.47454 * 300.00304 * 13 11 9 17 17 C 1.48086 * 110.99837 * 242.54313 * 2 1 3 18 18 H 1.09000 * 109.46642 * 177.46376 * 1 2 3 19 19 H 1.09003 * 109.46887 * 297.45477 * 1 2 3 20 20 H 1.08994 * 109.47352 * 57.45650 * 1 2 3 21 21 H 1.08996 * 110.64853 * 319.09408 * 3 2 1 22 22 H 1.09007 * 110.64224 * 81.99731 * 3 2 1 23 23 H 1.09008 * 110.76202 * 278.53793 * 4 3 2 24 24 H 1.08991 * 110.76544 * 155.14954 * 4 3 2 25 25 H 1.08998 * 117.54798 * 142.00247 * 6 5 4 26 26 H 1.09011 * 117.54557 * 356.83308 * 6 5 4 27 27 H 0.97001 * 119.99934 * 359.97438 * 12 11 9 28 28 H 1.08993 * 110.00697 * 26.41288 * 17 2 1 29 29 H 1.09004 * 110.00419 * 265.05729 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0015 1.3873 0.0000 4 6 3.4483 1.2153 -0.5316 5 6 3.2913 0.1065 -1.5883 6 6 4.5044 -0.6243 -2.1526 7 6 3.7019 0.3343 -3.0372 8 1 4.1593 1.2918 -3.2864 9 6 2.8337 -0.2705 -4.1103 10 1 1.9560 -0.8382 -3.8385 11 6 3.1598 -0.0992 -5.4389 12 7 4.2288 0.5917 -5.7698 13 14 2.0833 -0.8483 -6.7690 14 1 2.6465 -0.5222 -8.1038 15 1 0.7089 -0.2960 -6.6629 16 1 2.0388 -2.3227 -6.5978 17 6 1.9997 -0.6375 -1.2268 18 1 -0.3632 -1.0267 -0.0455 19 1 -0.3633 0.4738 0.9120 20 1 -0.3634 0.5528 -0.8662 21 1 1.4195 2.0223 -0.6679 22 1 2.0066 1.7969 1.0102 23 1 4.1180 0.8960 0.2671 24 1 3.8039 2.1381 -0.9897 25 1 4.4042 -1.6921 -2.3469 26 1 5.4896 -0.2972 -1.8200 27 1 4.7877 0.9811 -5.0791 28 1 1.2770 -0.5453 -2.0374 29 1 2.2157 -1.6889 -1.0371 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261145698.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:07 Heat of formation + Delta-G solvation = 0.200140 kcal Electronic energy + Delta-G solvation = -11037.121716 eV Core-core repulsion = 9152.630097 eV Total energy + Delta-G solvation = -1884.491619 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.39874 -36.93323 -34.35088 -31.38280 -28.51675 -27.11449 -25.34551 -22.82066 -22.14680 -20.22909 -18.52366 -16.71739 -16.52197 -15.72008 -15.58582 -15.08909 -14.51957 -14.12902 -13.75284 -13.51577 -12.84724 -12.61113 -12.52991 -12.39473 -12.28029 -11.96018 -11.78295 -11.31930 -10.80116 -10.35376 -10.20756 -9.44514 -8.68481 -6.33469 1.51349 1.58496 1.78407 2.53850 2.91014 3.09403 3.37033 3.66959 3.88464 4.21315 4.31047 4.37949 4.49214 4.57554 4.71166 4.77435 4.79471 4.88881 4.93192 5.01028 5.05738 5.13051 5.25371 5.40255 5.84670 6.05881 6.10621 6.13765 6.57053 7.42912 8.72025 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.049165 B = 0.012712 C = 0.011026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.374668 B = 2202.093222 C = 2538.815624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.528 5.528 3 C 0.042 3.958 4 C -0.085 4.085 5 C -0.148 4.148 6 C -0.190 4.190 7 C -0.013 4.013 8 H 0.041 0.959 9 C -0.580 4.580 10 H 0.051 0.949 11 C -0.029 4.029 12 N -0.934 5.934 13 Si 1.115 2.885 14 H -0.282 1.282 15 H -0.270 1.270 16 H -0.270 1.270 17 C 0.085 3.915 18 H 0.072 0.928 19 H 0.090 0.910 20 H 0.019 0.981 21 H 0.036 0.964 22 H 0.105 0.895 23 H 0.082 0.918 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.258 0.742 28 H 0.034 0.966 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.674 -0.159 9.442 11.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.252 5.252 3 C -0.085 4.085 4 C -0.122 4.122 5 C -0.149 4.149 6 C -0.228 4.228 7 C -0.032 4.032 8 H 0.059 0.941 9 C -0.617 4.617 10 H 0.069 0.931 11 C -0.228 4.228 12 N -0.570 5.570 13 Si 0.936 3.064 14 H -0.208 1.208 15 H -0.196 1.196 16 H -0.195 1.195 17 C -0.043 4.043 18 H 0.091 0.909 19 H 0.109 0.891 20 H 0.038 0.962 21 H 0.055 0.945 22 H 0.123 0.877 23 H 0.100 0.900 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.701 -0.601 8.290 10.079 hybrid contribution 0.252 0.610 0.753 1.001 sum -5.449 0.009 9.043 10.558 Atomic orbital electron populations 1.22579 0.86930 1.02469 1.01353 1.64844 1.09147 1.15296 1.35921 1.23238 0.94275 0.89594 1.01440 1.21987 0.97258 0.96426 0.96546 1.21837 0.95705 1.00647 0.96680 1.23030 0.94142 0.98036 1.07577 1.19913 0.98688 0.95306 0.89244 0.94107 1.21781 1.11381 1.35911 0.92662 0.93063 1.27330 0.98377 0.95376 1.01669 1.70903 1.15435 1.33586 1.37092 0.82965 0.74101 0.76222 0.73111 1.20757 1.19574 1.19509 1.22017 0.94330 0.97809 0.90098 0.90908 0.89149 0.96192 0.94533 0.87654 0.89959 0.91811 0.90976 0.89963 0.93216 0.94798 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.40 127.69 1.20 1.61 15 2 N -0.53 -17.49 5.56 -909.42 -5.06 -22.55 15 3 C 0.04 1.30 6.57 86.69 0.57 1.87 15 4 C -0.08 -2.94 6.83 31.64 0.22 -2.73 15 5 C -0.15 -6.33 2.44 -52.14 -0.13 -6.46 15 6 C -0.19 -8.68 10.00 30.46 0.30 -8.38 15 7 C -0.01 -0.66 5.11 -11.72 -0.06 -0.72 15 8 H 0.04 2.28 7.07 -2.39 -0.02 2.26 15 9 C -0.58 -32.93 8.76 25.60 0.22 -32.71 15 10 H 0.05 2.87 6.31 -2.91 -0.02 2.85 15 11 C -0.03 -1.67 5.46 84.65 0.46 -1.21 15 12 N -0.93 -57.48 13.65 21.45 0.29 -57.18 15 13 Si 1.11 50.11 29.90 68.60 2.05 52.16 15 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 15 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 16 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 17 C 0.09 3.41 6.00 86.20 0.52 3.93 15 18 H 0.07 1.84 8.14 -2.39 -0.02 1.83 15 19 H 0.09 1.96 8.14 -2.39 -0.02 1.94 15 20 H 0.02 0.57 8.01 -2.39 -0.02 0.55 15 21 H 0.04 1.17 7.96 -2.39 -0.02 1.15 15 22 H 0.11 2.59 8.14 -2.38 -0.02 2.57 15 23 H 0.08 2.60 8.14 -2.38 -0.02 2.58 15 24 H 0.06 2.21 8.12 -2.39 -0.02 2.19 15 25 H 0.07 3.36 8.14 -2.39 -0.02 3.34 15 26 H 0.08 3.44 8.14 -2.38 -0.02 3.42 15 27 H 0.26 16.05 6.80 -92.71 -0.63 15.42 15 28 H 0.03 1.49 6.20 -2.39 -0.01 1.48 15 29 H 0.07 2.63 8.14 -2.39 -0.02 2.61 15 Total: -1.00 -63.17 238.47 1.84 -61.33 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.25 Total: 11.04 kcal Atomic # 6 Polarization: -48.11 SS G_CDS: 3.31 Total: -44.80 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -4.76 Total: -79.73 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.05 Total: 52.16 kcal Total: -63.17 1.84 -61.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145698.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.532 kcal (2) G-P(sol) polarization free energy of solvation -63.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds