Wall clock time and date at job start Mon Mar 30 2020 02:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47149 * 2 1 4 4 C 1.50703 * 109.47213 * 240.00220 * 2 1 3 5 5 H 1.08004 * 119.99899 * 239.99956 * 4 2 1 6 6 C 1.37874 * 120.00231 * 59.99719 * 4 2 1 7 7 N 1.31516 * 119.99622 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99977 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47232 * 60.00306 * 8 6 4 10 10 H 1.48508 * 109.47036 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47553 * 300.00025 * 8 6 4 12 12 N 1.46902 * 109.47245 * 119.99972 * 2 1 3 13 13 C 1.48554 * 110.99896 * 299.14203 * 12 2 1 14 14 C 1.54380 * 104.59345 * 200.96337 * 13 12 2 15 15 H 1.09008 * 117.60210 * 244.71356 * 14 13 12 16 16 C 1.52996 * 118.13593 * 89.19432 * 14 13 12 17 17 C 1.54252 * 105.06306 * 23.84640 * 14 13 12 18 18 H 1.09007 * 121.79098 * 223.01342 * 17 14 13 19 19 C 1.48560 * 111.00076 * 183.72003 * 12 2 1 20 20 H 1.08993 * 109.47111 * 304.50864 * 1 2 3 21 21 H 1.08997 * 109.47111 * 64.51483 * 1 2 3 22 22 H 1.09005 * 109.46768 * 184.51027 * 1 2 3 23 23 H 0.97002 * 119.99705 * 179.97438 * 7 6 4 24 24 H 1.09009 * 110.40850 * 319.73249 * 13 12 2 25 25 H 1.08998 * 110.41801 * 82.05857 * 13 12 2 26 26 H 1.09001 * 117.43815 * 15.97718 * 16 14 13 27 27 H 1.08993 * 117.44852 * 160.68448 * 16 14 13 28 28 H 1.08998 * 110.41094 * 277.82149 * 19 12 2 29 29 H 1.08999 * 110.40935 * 40.26039 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0077 10 1 1.8260 -0.4206 -5.2205 11 1 3.8064 -1.1209 -4.0082 12 7 2.0198 -0.6925 1.1994 13 6 1.5605 -0.0070 2.4347 14 6 2.5441 -0.4758 3.5284 15 1 2.1426 -1.0756 4.3453 16 6 3.8207 0.3384 3.7477 17 6 3.8213 -0.8889 2.7685 18 1 4.3707 -1.7963 3.0195 19 6 3.5021 -0.6349 1.2796 20 1 -0.3633 0.5822 0.8468 21 1 -0.3633 0.4422 -0.9276 22 1 -0.3633 -1.0245 0.0808 23 1 0.7087 1.1612 -3.4844 24 1 1.6158 1.0748 2.3121 25 1 0.5427 -0.3092 2.6813 26 1 3.8558 1.3416 3.3228 27 1 4.3395 0.2130 4.6980 28 1 3.9469 -1.4115 0.6575 29 1 3.8612 0.3485 0.9762 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261148624.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:17 Heat of formation + Delta-G solvation = 17.929934 kcal Electronic energy + Delta-G solvation = -11121.990875 eV Core-core repulsion = 9238.268077 eV Total energy + Delta-G solvation = -1883.722798 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.55226 -36.54451 -34.03423 -30.65156 -29.43814 -27.04873 -25.17817 -22.01463 -21.38834 -20.71241 -18.33874 -17.41575 -16.65770 -15.53607 -15.31018 -14.91861 -14.27945 -13.63019 -13.51611 -13.25007 -12.92084 -12.68679 -12.58712 -12.31803 -12.16745 -11.94938 -11.61989 -11.06085 -10.88511 -10.75343 -10.51338 -9.12404 -8.14291 -6.27663 1.40844 1.43317 1.51077 2.40495 2.68633 3.12789 3.35917 3.71633 3.80713 4.17151 4.27310 4.38408 4.69051 4.73152 4.77475 4.86312 4.94458 4.98157 5.05708 5.11249 5.29333 5.35637 5.40006 5.66877 5.67477 6.18660 6.29168 6.58248 6.85374 7.41909 8.91545 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.064706 B = 0.012049 C = 0.010808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.619924 B = 2323.275438 C = 2590.126684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.206 3.794 3 H -0.038 1.038 4 C -0.523 4.523 5 H 0.055 0.945 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.964 3.036 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.271 1.271 12 N -0.517 5.517 13 C 0.054 3.946 14 C -0.160 4.160 15 H 0.134 0.866 16 C -0.136 4.136 17 C -0.174 4.174 18 H 0.134 0.866 19 C 0.072 3.928 20 H 0.026 0.974 21 H 0.063 0.937 22 H 0.033 0.967 23 H 0.263 0.737 24 H 0.021 0.979 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.133 0.867 28 H 0.068 0.932 29 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.015 -1.881 9.570 10.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.099 3.901 3 H -0.021 1.021 4 C -0.561 4.561 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.789 3.211 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.196 1.196 12 N -0.242 5.242 13 C -0.074 4.074 14 C -0.179 4.179 15 H 0.152 0.848 16 C -0.173 4.173 17 C -0.193 4.193 18 H 0.152 0.848 19 C -0.056 4.056 20 H 0.045 0.955 21 H 0.082 0.918 22 H 0.052 0.948 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.151 0.849 28 H 0.087 0.913 29 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 3.703 -2.318 9.362 10.331 hybrid contribution 0.277 0.697 -1.160 1.381 sum 3.980 -1.622 8.202 9.260 Atomic orbital electron populations 1.21631 0.97136 0.98936 1.00287 1.19228 0.92952 0.90081 0.87843 1.02077 1.21338 1.31332 1.12369 0.91039 0.92702 1.25764 0.95269 0.95771 1.02046 1.70011 1.37621 1.24190 1.24269 0.85521 0.78723 0.78687 0.78177 1.19578 1.20663 1.19620 1.65581 1.06567 1.49997 1.02014 1.22643 0.99226 0.95375 0.90128 1.23467 0.89499 1.04871 1.00025 0.84836 1.23773 0.98761 0.94340 1.00408 1.24137 1.03428 1.00981 0.90706 0.84781 1.22351 0.89281 0.98841 0.95112 0.95456 0.91819 0.94812 0.92783 0.96039 0.90192 0.90124 0.84912 0.91327 0.96545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.26 8.79 71.98 0.63 -5.63 15 2 C 0.21 11.12 1.83 44.17 0.08 11.20 15 3 H -0.04 -2.29 7.98 -2.39 -0.02 -2.31 15 4 C -0.52 -30.03 8.15 25.60 0.21 -29.83 15 5 H 0.05 3.14 7.19 -2.91 -0.02 3.12 15 6 C 0.01 0.57 5.29 84.65 0.45 1.02 15 7 N -0.92 -54.37 11.29 21.45 0.24 -54.13 15 8 Si 0.96 44.57 29.54 68.60 2.03 46.59 15 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 11 H -0.27 -12.16 7.11 99.48 0.71 -11.46 15 12 N -0.52 -23.68 5.19 -860.72 -4.47 -28.15 15 13 C 0.05 2.05 5.20 86.45 0.45 2.50 15 14 C -0.16 -4.69 6.98 -9.90 -0.07 -4.76 15 15 H 0.13 3.23 8.14 -2.38 -0.02 3.21 15 16 C -0.14 -3.42 10.30 32.00 0.33 -3.09 15 17 C -0.17 -5.33 7.29 -8.49 -0.06 -5.39 15 18 H 0.13 3.50 8.14 -2.38 -0.02 3.48 15 19 C 0.07 2.98 5.62 86.45 0.49 3.46 15 20 H 0.03 1.23 7.20 -2.39 -0.02 1.22 15 21 H 0.06 3.58 5.96 -2.39 -0.01 3.57 15 22 H 0.03 1.68 8.14 -2.38 -0.02 1.66 15 23 H 0.26 14.70 8.31 -92.71 -0.77 13.93 15 24 H 0.02 0.86 7.95 -2.38 -0.02 0.84 15 25 H 0.08 2.90 7.77 -2.39 -0.02 2.89 15 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 15 27 H 0.13 2.40 8.14 -2.39 -0.02 2.38 15 28 H 0.07 2.92 7.60 -2.39 -0.02 2.91 15 29 H 0.02 0.73 7.92 -2.39 -0.02 0.71 15 Total: -1.00 -62.71 235.37 1.41 -61.30 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.11 Total: 4.90 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 2.50 Total: -30.51 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -4.22 Total: -82.28 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -62.71 1.41 -61.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148624.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.227 kcal (2) G-P(sol) polarization free energy of solvation -62.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds