Wall clock time and date at job start Mon Mar 30 2020 02:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99518 * 2 1 4 4 C 1.50700 * 110.54245 * 301.21843 * 3 2 1 5 5 H 1.07997 * 119.99970 * 125.79503 * 4 3 2 6 6 C 1.37872 * 120.00065 * 305.79902 * 4 3 2 7 7 N 1.31518 * 120.00227 * 353.95465 * 6 4 3 8 8 Si 1.86799 * 120.00098 * 173.94916 * 6 4 3 9 9 H 1.48502 * 109.47339 * 60.00343 * 8 6 4 10 10 H 1.48506 * 109.47195 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47238 * 300.00024 * 8 6 4 12 12 C 1.54892 * 110.48673 * 178.61020 * 3 2 1 13 13 C 1.54892 * 102.74914 * 279.26614 * 12 3 2 14 14 C 1.54276 * 104.19170 * 322.05415 * 13 12 3 15 15 H 1.08993 * 117.40944 * 243.63455 * 14 13 12 16 16 C 1.52997 * 118.19677 * 87.79090 * 14 13 12 17 17 C 1.52998 * 60.37904 * 266.38341 * 16 14 13 18 18 H 1.09007 * 119.75538 * 248.88227 * 17 16 14 19 19 H 1.08999 * 109.47187 * 185.35357 * 1 2 3 20 20 H 1.08999 * 109.47301 * 305.35300 * 1 2 3 21 21 H 1.08998 * 109.47206 * 65.35883 * 1 2 3 22 22 H 1.00898 * 110.99701 * 123.94840 * 2 1 3 23 23 H 0.97001 * 120.00486 * 180.02562 * 7 6 4 24 24 H 1.08998 * 110.75442 * 37.57656 * 12 3 2 25 25 H 1.08994 * 110.76169 * 160.94868 * 12 3 2 26 26 H 1.08994 * 110.48914 * 203.38056 * 13 12 3 27 27 H 1.08998 * 110.60039 * 80.78305 * 13 12 3 28 28 H 1.09004 * 117.46129 * 158.78618 * 16 14 13 29 29 H 1.09000 * 117.46272 * 13.98212 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.5019 2.1272 -1.2068 5 1 0.9959 3.0731 -1.0819 6 6 1.6965 1.6111 -2.4704 7 7 2.4150 0.5215 -2.6323 8 14 0.9396 2.4594 -3.9526 9 1 1.4597 3.8471 -4.0479 10 1 1.2953 1.7123 -5.1857 11 1 -0.5374 2.4936 -3.8026 12 6 3.5438 1.3579 0.0352 13 6 3.8496 1.1246 1.5356 14 6 2.7728 1.9470 2.2734 15 1 3.1121 2.7787 2.8906 16 6 1.4307 1.2765 2.5736 17 6 1.5939 2.1039 1.2970 18 1 1.0647 3.0514 1.1951 19 1 -0.3633 -1.0232 0.0959 20 1 -0.3634 0.5946 0.8381 21 1 -0.3633 0.4285 -0.9341 22 1 1.8306 -0.5260 0.7814 23 1 2.5523 0.1586 -3.5213 24 1 3.9368 0.5413 -0.5706 25 1 3.9462 2.3148 -0.2968 26 1 4.8457 1.4910 1.7834 27 1 3.7598 0.0674 1.7854 28 1 0.8245 1.7012 3.3738 29 1 1.3749 0.1932 2.4668 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261166089.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:21 Heat of formation + Delta-G solvation = 32.148834 kcal Electronic energy + Delta-G solvation = -11561.918445 eV Core-core repulsion = 9678.812225 eV Total energy + Delta-G solvation = -1883.106220 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.04999 -33.63394 -31.72140 -30.18482 -27.20260 -24.25967 -22.73310 -21.76627 -19.12662 -18.17897 -16.35918 -15.20699 -14.36465 -14.04610 -13.49381 -12.83414 -12.34986 -11.90350 -11.56976 -11.37997 -10.88215 -10.80441 -10.65225 -10.48246 -10.09268 -9.66988 -9.57076 -9.24340 -8.85683 -8.73210 -8.21537 -6.74984 -5.80237 -3.90028 3.37672 3.42881 3.45593 4.47945 4.52435 5.37805 5.41377 5.66258 5.75913 5.87263 6.02525 6.20972 6.39886 6.45516 6.56212 6.59344 6.71107 6.80468 6.89603 7.07637 7.16573 7.35507 7.48291 7.78562 7.95778 8.30735 8.73509 8.95506 9.26583 9.74957 11.23648 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.053675 B = 0.016316 C = 0.015341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.528315 B = 1715.730405 C = 1824.748083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.647 5.647 3 C 0.273 3.727 4 C -0.523 4.523 5 H 0.051 0.949 6 C 0.087 3.913 7 N -0.843 5.843 8 Si 0.876 3.124 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.279 1.279 12 C -0.091 4.091 13 C -0.103 4.103 14 C -0.180 4.180 15 H 0.092 0.908 16 C -0.170 4.170 17 C -0.168 4.168 18 H 0.093 0.907 19 H 0.030 0.970 20 H 0.003 0.997 21 H 0.065 0.935 22 H 0.298 0.702 23 H 0.254 0.746 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 0.332 6.109 6.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.274 5.274 3 C 0.184 3.816 4 C -0.562 4.562 5 H 0.069 0.931 6 C -0.120 4.120 7 N -0.478 5.478 8 Si 0.704 3.296 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.205 1.205 12 C -0.129 4.129 13 C -0.140 4.140 14 C -0.199 4.199 15 H 0.110 0.890 16 C -0.208 4.208 17 C -0.188 4.188 18 H 0.111 0.889 19 H 0.048 0.952 20 H 0.021 0.979 21 H 0.084 0.916 22 H 0.114 0.886 23 H 0.064 0.936 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.106 0.101 5.249 5.251 hybrid contribution -0.724 0.857 0.193 1.138 sum -0.830 0.958 5.442 5.588 Atomic orbital electron populations 1.21841 0.90258 0.97333 1.00346 1.60612 1.05579 1.15758 1.45481 1.18889 0.90538 0.83895 0.88321 1.20698 1.39988 1.05549 0.89965 0.93081 1.24868 0.94507 0.94527 0.98078 1.70072 1.36130 1.20084 1.21469 0.86962 0.79986 0.79688 0.83008 1.20536 1.21432 1.20494 1.22578 0.97812 1.01262 0.91265 1.22120 0.95990 0.97961 0.97962 1.23157 0.90268 1.02488 1.03966 0.88990 1.22905 0.99111 0.98995 0.99745 1.24466 1.00265 1.01358 0.92722 0.88878 0.95161 0.97912 0.91589 0.88566 0.93583 0.90268 0.92771 0.93130 0.92790 0.90121 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.15 9.87 60.07 0.59 1.75 15 2 N -0.65 -15.25 5.53 -106.66 -0.59 -15.84 15 3 C 0.27 6.60 0.29 -131.09 -0.04 6.56 15 4 C -0.52 -14.17 6.85 -34.44 -0.24 -14.41 15 5 H 0.05 1.40 7.61 -52.49 -0.40 1.00 15 6 C 0.09 2.37 5.17 -17.82 -0.09 2.28 15 7 N -0.84 -23.79 11.74 55.43 0.65 -23.14 15 8 Si 0.88 21.19 29.54 -169.99 -5.02 16.17 15 9 H -0.28 -6.74 7.11 56.52 0.40 -6.33 15 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 12 C -0.09 -2.11 5.44 -24.74 -0.13 -2.25 15 13 C -0.10 -1.98 6.27 -25.07 -0.16 -2.14 15 14 C -0.18 -3.40 6.94 -89.50 -0.62 -4.02 15 15 H 0.09 1.59 8.14 -51.93 -0.42 1.17 15 16 C -0.17 -3.09 8.68 -26.73 -0.23 -3.33 15 17 C -0.17 -3.58 5.23 -89.50 -0.47 -4.05 15 18 H 0.09 2.04 7.90 -51.93 -0.41 1.63 15 19 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.00 0.05 6.41 -51.93 -0.33 -0.28 15 21 H 0.07 1.61 7.22 -51.93 -0.38 1.24 15 22 H 0.30 6.50 6.30 -39.29 -0.25 6.25 15 23 H 0.25 6.97 8.31 -40.82 -0.34 6.63 15 24 H 0.08 2.01 7.58 -51.93 -0.39 1.62 15 25 H 0.05 1.30 8.05 -51.93 -0.42 0.89 15 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 27 H 0.05 1.01 7.75 -51.93 -0.40 0.60 15 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 15 29 H 0.08 1.51 6.39 -51.93 -0.33 1.17 15 LS Contribution 228.96 15.07 3.45 3.45 Total: -1.00 -27.76 228.96 -7.03 -34.79 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.14 Total: 4.17 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -1.39 Total: -19.60 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.06 Total: -38.98 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -27.76 -7.03 -34.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166089.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.937 kcal (2) G-P(sol) polarization free energy of solvation -27.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds