Wall clock time and date at job start Mon Mar 30 2020 02:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99518 * 2 1 4 4 C 1.50700 * 110.54245 * 301.21843 * 3 2 1 5 5 H 1.07997 * 119.99970 * 125.79503 * 4 3 2 6 6 C 1.37872 * 120.00065 * 305.79902 * 4 3 2 7 7 N 1.31518 * 120.00227 * 353.95465 * 6 4 3 8 8 Si 1.86799 * 120.00098 * 173.94916 * 6 4 3 9 9 H 1.48502 * 109.47339 * 60.00343 * 8 6 4 10 10 H 1.48506 * 109.47195 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47238 * 300.00024 * 8 6 4 12 12 C 1.54892 * 110.48673 * 178.61020 * 3 2 1 13 13 C 1.54892 * 102.74914 * 279.26614 * 12 3 2 14 14 C 1.54276 * 104.19170 * 322.05415 * 13 12 3 15 15 H 1.08993 * 117.40944 * 243.63455 * 14 13 12 16 16 C 1.52997 * 118.19677 * 87.79090 * 14 13 12 17 17 C 1.52998 * 60.37904 * 266.38341 * 16 14 13 18 18 H 1.09007 * 119.75538 * 248.88227 * 17 16 14 19 19 H 1.08999 * 109.47187 * 185.35357 * 1 2 3 20 20 H 1.08999 * 109.47301 * 305.35300 * 1 2 3 21 21 H 1.08998 * 109.47206 * 65.35883 * 1 2 3 22 22 H 1.00898 * 110.99701 * 123.94840 * 2 1 3 23 23 H 0.97001 * 120.00486 * 180.02562 * 7 6 4 24 24 H 1.08998 * 110.75442 * 37.57656 * 12 3 2 25 25 H 1.08994 * 110.76169 * 160.94868 * 12 3 2 26 26 H 1.08994 * 110.48914 * 203.38056 * 13 12 3 27 27 H 1.08998 * 110.60039 * 80.78305 * 13 12 3 28 28 H 1.09004 * 117.46129 * 158.78618 * 16 14 13 29 29 H 1.09000 * 117.46272 * 13.98212 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.5019 2.1272 -1.2068 5 1 0.9959 3.0731 -1.0819 6 6 1.6965 1.6111 -2.4704 7 7 2.4150 0.5215 -2.6323 8 14 0.9396 2.4594 -3.9526 9 1 1.4597 3.8471 -4.0479 10 1 1.2953 1.7123 -5.1857 11 1 -0.5374 2.4936 -3.8026 12 6 3.5438 1.3579 0.0352 13 6 3.8496 1.1246 1.5356 14 6 2.7728 1.9470 2.2734 15 1 3.1121 2.7787 2.8906 16 6 1.4307 1.2765 2.5736 17 6 1.5939 2.1039 1.2970 18 1 1.0647 3.0514 1.1951 19 1 -0.3633 -1.0232 0.0959 20 1 -0.3634 0.5946 0.8381 21 1 -0.3633 0.4285 -0.9341 22 1 1.8306 -0.5260 0.7814 23 1 2.5523 0.1586 -3.5213 24 1 3.9368 0.5413 -0.5706 25 1 3.9462 2.3148 -0.2968 26 1 4.8457 1.4910 1.7834 27 1 3.7598 0.0674 1.7854 28 1 0.8245 1.7012 3.3738 29 1 1.3749 0.1932 2.4668 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261166089.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:21 Heat of formation + Delta-G solvation = 15.029031 kcal Electronic energy + Delta-G solvation = -11562.660816 eV Core-core repulsion = 9678.812225 eV Total energy + Delta-G solvation = -1883.848590 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.71617 -35.45810 -33.69752 -31.88952 -29.05284 -26.17683 -24.55140 -23.36484 -20.71212 -19.98326 -18.25871 -17.03261 -16.27864 -15.78740 -15.21687 -14.65084 -14.09131 -13.58904 -13.25696 -13.14625 -12.81893 -12.64258 -12.52033 -12.34469 -11.85258 -11.39332 -11.35755 -10.93232 -10.75454 -10.34298 -10.25353 -8.55137 -7.88265 -6.03169 1.42419 1.44164 1.49847 2.50142 2.93590 3.34234 3.83029 4.07493 4.14321 4.24399 4.48900 4.70383 4.82108 4.86585 4.88195 4.98900 5.08693 5.15756 5.28269 5.36046 5.41094 5.60727 5.64582 5.81205 5.91721 6.35027 6.79349 7.03715 7.41635 7.64610 9.13076 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.053675 B = 0.016316 C = 0.015341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.528315 B = 1715.730405 C = 1824.748083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.662 5.662 3 C 0.264 3.736 4 C -0.537 4.537 5 H 0.037 0.963 6 C 0.046 3.954 7 N -0.867 5.867 8 Si 0.928 3.072 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.278 1.278 12 C -0.089 4.089 13 C -0.094 4.094 14 C -0.166 4.166 15 H 0.115 0.885 16 C -0.145 4.145 17 C -0.199 4.199 18 H 0.080 0.920 19 H 0.053 0.947 20 H 0.014 0.986 21 H 0.033 0.967 22 H 0.310 0.690 23 H 0.251 0.749 24 H 0.050 0.950 25 H 0.034 0.966 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.107 0.893 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.404 0.273 7.647 7.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.291 5.291 3 C 0.174 3.826 4 C -0.576 4.576 5 H 0.055 0.945 6 C -0.158 4.158 7 N -0.502 5.502 8 Si 0.755 3.245 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.204 1.204 12 C -0.128 4.128 13 C -0.132 4.132 14 C -0.184 4.184 15 H 0.133 0.867 16 C -0.182 4.182 17 C -0.220 4.220 18 H 0.098 0.902 19 H 0.071 0.929 20 H 0.032 0.968 21 H 0.052 0.948 22 H 0.127 0.873 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.125 0.875 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.268 0.049 6.795 6.800 hybrid contribution -0.679 0.896 -0.279 1.158 sum -0.947 0.945 6.515 6.651 Atomic orbital electron populations 1.21734 0.89572 0.98650 0.99051 1.60465 1.06380 1.15809 1.46433 1.18831 0.90800 0.84217 0.88717 1.21009 1.39517 1.05380 0.91679 0.94512 1.25423 0.94963 0.95187 1.00207 1.70187 1.37195 1.21228 1.21586 0.86130 0.79161 0.78822 0.80416 1.20306 1.21181 1.20411 1.22405 0.97431 0.99026 0.93940 1.22021 0.97492 0.98895 0.94746 1.23269 0.89658 1.02828 1.02692 0.86740 1.22981 0.98515 0.98870 0.97873 1.24183 1.03269 1.01666 0.92865 0.90178 0.92868 0.96810 0.94776 0.87292 0.93950 0.93080 0.94751 0.90907 0.91839 0.87465 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.59 9.87 127.69 1.26 3.85 15 2 N -0.66 -30.74 5.53 -491.36 -2.72 -33.46 15 3 C 0.26 12.69 0.29 3.86 0.00 12.69 15 4 C -0.54 -29.53 6.85 25.60 0.18 -29.35 15 5 H 0.04 2.06 7.61 -2.91 -0.02 2.04 15 6 C 0.05 2.56 5.17 84.65 0.44 3.00 15 7 N -0.87 -49.65 11.74 21.45 0.25 -49.40 15 8 Si 0.93 44.12 29.54 68.60 2.03 46.15 15 9 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 10 H -0.29 -13.41 7.11 99.48 0.71 -12.70 15 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 15 12 C -0.09 -4.15 5.44 31.89 0.17 -3.98 15 13 C -0.09 -3.40 6.27 31.67 0.20 -3.20 15 14 C -0.17 -5.71 6.94 -10.07 -0.07 -5.78 15 15 H 0.11 3.46 8.14 -2.39 -0.02 3.45 15 16 C -0.15 -4.75 8.68 30.59 0.27 -4.48 15 17 C -0.20 -8.21 5.23 -10.07 -0.05 -8.26 15 18 H 0.08 3.47 7.90 -2.38 -0.02 3.45 15 19 H 0.05 2.00 8.14 -2.39 -0.02 1.98 15 20 H 0.01 0.55 6.41 -2.39 -0.02 0.54 15 21 H 0.03 1.66 7.22 -2.39 -0.02 1.64 15 22 H 0.31 12.98 6.30 -89.70 -0.57 12.41 15 23 H 0.25 13.99 8.31 -92.71 -0.77 13.22 15 24 H 0.05 2.63 7.58 -2.39 -0.02 2.61 15 25 H 0.03 1.67 8.05 -2.39 -0.02 1.65 15 26 H 0.07 2.31 8.14 -2.39 -0.02 2.29 15 27 H 0.06 2.18 7.75 -2.39 -0.02 2.16 15 28 H 0.11 2.98 8.14 -2.39 -0.02 2.96 15 29 H 0.09 2.79 6.39 -2.39 -0.02 2.78 15 Total: -1.00 -58.96 228.96 2.51 -56.45 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.56 Total: 15.80 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 2.39 Total: -35.54 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -2.46 Total: -82.86 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -58.96 2.51 -56.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166089.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.474 kcal (2) G-P(sol) polarization free energy of solvation -58.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds