Wall clock time and date at job start Mon Mar 30 2020 02:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00096 * 2 1 4 4 C 1.50699 * 110.43300 * 301.70223 * 3 2 1 5 5 H 1.07998 * 119.99927 * 119.26190 * 4 3 2 6 6 C 1.37875 * 120.00287 * 299.25433 * 4 3 2 7 7 N 1.31520 * 119.99771 * 357.99524 * 6 4 3 8 8 Si 1.86800 * 120.00255 * 177.99167 * 6 4 3 9 9 H 1.48495 * 109.46870 * 60.00592 * 8 6 4 10 10 H 1.48508 * 109.46995 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47256 * 300.00239 * 8 6 4 12 12 C 1.54894 * 110.48586 * 179.01775 * 3 2 1 13 13 C 1.54882 * 102.74545 * 203.37866 * 12 3 2 14 14 C 1.54267 * 104.19814 * 37.94290 * 13 12 3 15 15 H 1.09002 * 117.76040 * 116.74342 * 14 13 12 16 16 C 1.52999 * 118.19855 * 272.20747 * 14 13 12 17 17 C 1.53000 * 60.37725 * 93.61669 * 16 14 13 18 18 H 1.09009 * 119.30237 * 111.30494 * 17 16 14 19 19 H 1.09006 * 109.47327 * 64.46364 * 1 2 3 20 20 H 1.09001 * 109.47598 * 184.46347 * 1 2 3 21 21 H 1.09004 * 109.47191 * 304.46455 * 1 2 3 22 22 H 1.00903 * 110.99599 * 236.04572 * 2 1 3 23 23 H 0.96997 * 120.00212 * 179.97438 * 7 6 4 24 24 H 1.08995 * 110.75219 * 321.69372 * 12 3 2 25 25 H 1.09000 * 110.75087 * 85.06522 * 12 3 2 26 26 H 1.08998 * 110.48992 * 279.25893 * 13 12 3 27 27 H 1.09007 * 110.48503 * 156.62157 * 13 12 3 28 28 H 1.09003 * 117.45950 * 201.21389 * 16 14 13 29 29 H 1.08996 * 117.45809 * 346.01786 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.4912 2.1286 -1.2015 5 1 0.8943 3.0185 -1.0674 6 6 1.7920 1.6852 -2.4719 7 7 2.5518 0.6242 -2.6353 8 14 1.1204 2.5914 -3.9609 9 1 1.6055 3.9948 -3.9465 10 1 1.5853 1.9191 -5.2007 11 1 -0.3639 2.5802 -3.9191 12 6 3.5441 1.3576 0.0249 13 6 3.8887 2.7448 0.6214 14 6 2.8064 2.9737 1.6966 15 1 3.1308 3.0559 2.7340 16 6 1.4899 3.6261 1.2698 17 6 1.6027 2.1006 1.3015 18 1 1.0402 1.5394 2.0478 19 1 -0.3634 0.4430 -0.9273 20 1 -0.3634 -1.0245 0.0800 21 1 -0.3634 0.5816 0.8473 22 1 1.8305 -0.5262 -0.7814 23 1 2.7632 0.3120 -3.5290 24 1 3.9129 0.5583 0.6676 25 1 3.9457 1.2602 -0.9838 26 1 3.8319 3.5155 -0.1473 27 1 4.8798 2.7295 1.0749 28 1 0.8901 4.1020 2.0456 29 1 1.4614 4.1078 0.2925 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261166095.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:24 Heat of formation + Delta-G solvation = 9.645668 kcal Electronic energy + Delta-G solvation = -11589.936513 eV Core-core repulsion = 9705.854483 eV Total energy + Delta-G solvation = -1884.082031 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.44166 -35.92178 -33.73402 -31.68061 -28.68570 -26.44221 -24.45733 -23.22734 -21.10573 -19.92024 -17.75700 -16.97663 -16.80970 -15.47876 -15.01922 -14.47587 -14.37767 -13.76044 -13.36871 -13.22234 -12.83016 -12.65060 -12.34700 -12.14185 -11.77237 -11.46373 -11.28529 -11.01210 -10.70821 -10.45277 -10.14019 -8.87730 -7.96825 -6.18717 1.37689 1.40119 1.45518 2.41548 3.07941 3.18265 3.91137 4.10055 4.22778 4.51690 4.60969 4.79480 4.87308 4.91930 4.99644 5.04908 5.10365 5.24163 5.29321 5.37192 5.44309 5.69335 5.72265 5.83093 5.95332 6.32561 6.81796 6.97309 7.15852 7.52419 8.94452 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.039511 B = 0.019281 C = 0.017384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.497754 B = 1451.861922 C = 1610.265374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.692 5.692 3 C 0.248 3.752 4 C -0.529 4.529 5 H 0.048 0.952 6 C 0.027 3.973 7 N -0.909 5.909 8 Si 0.937 3.063 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.279 1.279 12 C -0.101 4.101 13 C -0.080 4.080 14 C -0.165 4.165 15 H 0.119 0.881 16 C -0.153 4.153 17 C -0.153 4.153 18 H 0.094 0.906 19 H -0.001 1.001 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.340 0.660 23 H 0.261 0.739 24 H 0.036 0.964 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 2.759 4.849 5.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.322 5.322 3 C 0.158 3.842 4 C -0.568 4.568 5 H 0.067 0.933 6 C -0.172 4.172 7 N -0.549 5.549 8 Si 0.765 3.235 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.205 1.205 12 C -0.139 4.139 13 C -0.118 4.118 14 C -0.183 4.183 15 H 0.137 0.863 16 C -0.190 4.190 17 C -0.172 4.172 18 H 0.112 0.888 19 H 0.018 0.982 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.158 0.842 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.510 2.549 5.393 5.987 hybrid contribution -0.584 0.567 -2.050 2.206 sum -1.093 3.116 3.342 4.699 Atomic orbital electron populations 1.21815 0.90191 0.99166 0.98764 1.61019 1.06532 1.16052 1.48607 1.18940 0.90766 0.85161 0.89326 1.21881 1.31920 1.11193 0.91840 0.93339 1.25527 0.95056 0.95865 1.00797 1.69847 1.37429 1.24899 1.22687 0.85936 0.78610 0.79084 0.79900 1.20174 1.21224 1.20523 1.22463 0.97391 0.94829 0.99253 1.21737 0.96958 0.97019 0.96104 1.23221 0.89623 1.06203 0.99263 0.86309 1.23011 0.99104 0.94984 1.01938 1.23211 1.02284 0.92000 0.99703 0.88796 0.98188 0.92768 0.92932 0.84155 0.92966 0.94553 0.92416 0.93474 0.91115 0.87628 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.22 10.14 127.69 1.30 3.52 15 2 N -0.69 -33.20 6.47 -491.34 -3.18 -36.38 15 3 C 0.25 11.91 0.41 3.86 0.00 11.92 15 4 C -0.53 -27.61 6.02 25.60 0.15 -27.45 15 5 H 0.05 2.58 6.01 -2.91 -0.02 2.56 15 6 C 0.03 1.44 5.17 84.65 0.44 1.87 15 7 N -0.91 -49.29 10.03 21.45 0.22 -49.08 15 8 Si 0.94 42.97 29.54 68.60 2.03 45.00 15 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 10 H -0.29 -13.00 7.11 99.48 0.71 -12.30 15 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 15 12 C -0.10 -4.75 5.79 31.88 0.18 -4.57 15 13 C -0.08 -3.23 6.41 31.67 0.20 -3.03 15 14 C -0.17 -6.11 6.94 -10.07 -0.07 -6.18 15 15 H 0.12 3.71 8.14 -2.39 -0.02 3.69 15 16 C -0.15 -5.74 9.44 30.59 0.29 -5.46 15 17 C -0.15 -6.43 5.47 -10.07 -0.06 -6.48 15 18 H 0.09 3.82 7.40 -2.38 -0.02 3.80 15 19 H 0.00 -0.02 7.27 -2.38 -0.02 -0.04 15 20 H 0.05 2.07 8.14 -2.39 -0.02 2.05 15 21 H 0.05 2.14 6.70 -2.38 -0.02 2.13 15 22 H 0.34 17.65 7.13 -89.69 -0.64 17.01 15 23 H 0.26 13.75 8.31 -92.71 -0.77 12.98 15 24 H 0.04 1.67 8.14 -2.39 -0.02 1.65 15 25 H 0.06 3.04 6.23 -2.39 -0.01 3.03 15 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 27 H 0.07 2.45 8.14 -2.38 -0.02 2.43 15 28 H 0.11 3.28 8.14 -2.39 -0.02 3.26 15 29 H 0.08 3.27 6.31 -2.39 -0.02 3.26 15 Total: -1.00 -54.67 227.35 2.00 -52.67 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.50 Total: 23.65 kcal Atomic # 6 Polarization: -38.30 SS G_CDS: 2.44 Total: -35.86 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -2.96 Total: -85.46 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -54.67 2.00 -52.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166095.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.316 kcal (2) G-P(sol) polarization free energy of solvation -54.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds