Wall clock time and date at job start Mon Mar 30 2020 02:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86804 * 120.00006 * 2 1 4 4 H 1.48491 * 109.46940 * 269.99963 * 3 2 1 5 5 H 1.48504 * 109.47105 * 30.00026 * 3 2 1 6 6 H 1.48494 * 109.46828 * 149.99749 * 3 2 1 7 7 C 1.39857 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00415 * 197.22412 * 7 2 1 9 9 C 1.41201 * 119.99820 * 17.23103 * 7 2 1 10 10 C 1.41234 * 120.96157 * 203.23839 * 9 7 2 11 11 N 1.31735 * 118.87521 * 179.69953 * 10 9 7 12 12 C 1.32871 * 121.00727 * 0.27534 * 11 10 9 13 13 S 1.76200 * 118.92088 * 179.97438 * 12 11 10 14 14 N 1.32877 * 122.16130 * 0.02562 * 12 11 10 15 15 C 1.31731 * 121.00690 * 359.97364 * 14 12 11 16 16 H 0.97005 * 119.99772 * 359.97438 * 1 2 3 17 17 H 1.07998 * 120.55853 * 359.96745 * 10 9 7 18 18 H 1.41002 * 99.99810 * 89.99883 * 13 12 11 19 19 H 1.08005 * 120.56340 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.4906 2.0464 -1.4000 5 1 1.4405 2.6527 0.7001 6 1 3.5406 1.4401 0.7001 7 6 2.0083 -1.2112 0.0005 8 1 3.0520 -1.2322 0.2775 9 6 1.3498 -2.4067 -0.3612 10 6 1.8304 -3.6614 0.0742 11 7 1.1805 -4.7503 -0.2827 12 6 0.0936 -4.6802 -1.0436 13 16 -0.7325 -6.1716 -1.4888 14 7 -0.3904 -3.5225 -1.4808 15 6 0.1946 -2.3830 -1.1734 16 1 -0.4850 0.8401 0.0004 17 1 2.7132 -3.7266 0.6929 18 1 -1.6374 -6.2807 -0.4130 19 1 -0.2051 -1.4461 -1.5323 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261216583.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:43 Heat of formation + Delta-G solvation = 9.600005 kcal Electronic energy + Delta-G solvation = -8551.622107 eV Core-core repulsion = 6773.198867 eV Total energy + Delta-G solvation = -1778.423240 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 182.021 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.81196 -36.32792 -34.04064 -32.48423 -28.04944 -24.76481 -24.14057 -19.64443 -19.18743 -18.01383 -17.05039 -16.78130 -15.33226 -15.21223 -14.27223 -13.96823 -13.79964 -13.24675 -12.85287 -12.37871 -12.02777 -11.47439 -11.35170 -11.19665 -10.10631 -9.73721 -9.06776 -8.97390 -6.74933 0.21351 0.81208 0.83624 1.40369 1.46917 1.58401 1.71144 2.11362 2.53638 3.48953 3.92062 4.33136 4.47247 4.80803 4.91876 5.43202 5.54097 6.06810 6.21716 6.38118 6.75858 7.60699 7.93708 Molecular weight = 182.02amu Principal moments of inertia in cm(-1) A = 0.111048 B = 0.011028 C = 0.010273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 252.083348 B = 2538.368807 C = 2724.942102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.030 3.970 3 Si 1.006 2.994 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.246 1.246 7 C -0.410 4.410 8 H 0.114 0.886 9 C 0.002 3.998 10 C -0.005 4.005 11 N -0.461 5.461 12 C 0.067 3.933 13 S -0.059 6.059 14 N -0.475 5.475 15 C 0.042 3.958 16 H 0.307 0.693 17 H 0.167 0.833 18 H 0.078 0.922 19 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.604 3.332 0.537 4.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.191 4.191 3 Si 0.824 3.176 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.169 1.169 7 C -0.439 4.439 8 H 0.131 0.869 9 C -0.006 4.006 10 C -0.181 4.181 11 N -0.175 5.175 12 C -0.298 4.298 13 S 0.093 5.907 14 N -0.190 5.190 15 C -0.137 4.137 16 H 0.118 0.882 17 H 0.184 0.816 18 H 0.043 0.957 19 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.523 1.652 -0.160 2.253 hybrid contribution 0.316 2.171 1.299 2.550 sum 1.839 3.823 1.139 4.393 Atomic orbital electron populations 1.69804 1.09779 1.32962 1.28538 1.27270 0.95622 1.05885 0.90360 0.84814 0.79085 0.73641 0.80092 1.18219 1.18966 1.16944 1.20246 0.99174 0.90628 1.33808 0.86855 1.19668 0.94084 0.95693 0.91164 1.23407 1.02947 0.87642 1.04138 1.68093 1.06260 1.33736 1.09382 1.23022 1.00122 0.94807 1.11825 1.85586 1.45299 1.24598 1.35183 1.68215 1.31233 0.98957 1.20549 1.23457 0.96900 0.94743 0.98569 0.88162 0.81558 0.95720 0.82589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.46 10.92 21.81 0.24 -35.22 13 2 C 0.03 1.25 5.19 85.22 0.44 1.69 13 3 Si 1.01 30.66 29.59 68.60 2.03 32.69 13 4 H -0.26 -7.75 7.11 99.48 0.71 -7.04 13 5 H -0.27 -7.78 7.11 99.48 0.71 -7.07 13 6 H -0.25 -7.13 7.11 99.48 0.71 -6.42 13 7 C -0.41 -18.59 9.09 23.39 0.21 -18.38 13 8 H 0.11 4.60 7.90 -2.91 -0.02 4.58 13 9 C 0.00 0.09 5.61 -21.08 -0.12 -0.03 13 10 C 0.00 -0.24 11.11 85.44 0.95 0.71 13 11 N -0.46 -23.74 10.36 -194.22 -2.01 -25.75 13 12 C 0.07 3.51 7.91 180.23 1.43 4.93 13 13 S -0.06 -2.52 26.14 -56.49 -1.48 -4.00 13 14 N -0.48 -25.71 10.36 -194.22 -2.01 -27.72 13 15 C 0.04 2.21 9.99 85.44 0.85 3.07 13 16 H 0.31 12.11 8.30 -92.70 -0.77 11.34 13 17 H 0.17 6.99 8.06 -2.91 -0.02 6.97 13 18 H 0.08 3.08 9.55 73.80 0.70 3.79 13 19 H 0.16 8.19 6.18 -2.91 -0.02 8.17 13 Total: -1.00 -56.22 197.59 2.52 -53.70 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 1.99 Total: 14.31 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 3.77 Total: -8.01 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -3.79 Total: -88.69 kcal Atomic # 14 Polarization: 30.66 SS G_CDS: 2.03 Total: 32.69 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -1.48 Total: -4.00 kcal Total: -56.22 2.52 -53.70 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216583.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.295 kcal (2) G-P(sol) polarization free energy of solvation -56.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds